Chroicocephalus ridibundus (black-headed gull): 134522745
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Entry
134522745 CDS
T10910
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03082
ATP-dependent chromatin remodeling
crid03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134522745 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134522745 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crid01009
]
134522745 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134522745 (SMARCB1)
03036 Chromosome and associated proteins [BR:
crid03036
]
134522745 (SMARCB1)
Protein phosphatases and associated proteins [BR:
crid01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134522745 (SMARCB1)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134522745 (SMARCB1)
SWI/SNF complex
134522745 (SMARCB1)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134522745 (SMARCB1)
PBAF complex
134522745 (SMARCB1)
SWI/SNF complex
134522745 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
134522745
NCBI-ProteinID:
XP_063206820
LinkDB
All DBs
Position
13:complement(1674860..1687371)
Genome browser
AA seq
429 aa
AA seq
DB search
MRPAAAGLGRAAASRRPAPLAAAGCPGPPQDVGRSRRPPAAATMMMMALSKTFGQKPVKF
QLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHENQRSHSPR
RYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNNQWVPTLP
NSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEID
GQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILED
QSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIR
GQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMR
RLANTAPAW
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccgcggcggctggactaggccgcgccgccgcctctcgccgccccgcgcccctc
gccgccgccggctgcccgggacccccgcaggacgtcgggcgctcccgccgccctccagcc
gccgccaccatgatgatgatggcgctgagtaagaccttcgggcagaagcccgtcaagttc
cagctggaggaggacggcgagttctacatgatcggctccgaggtggggaactacttgcgt
atgtttcggggttccctgtacaagagatatccctcgctctggaggcgacttgccacagtg
gaagaaaggaagaagatagtggcctcttcacatgaaaatcaacggtctcacagtcccaga
agatatcacggctatacaacattagccactagcgtgacactgctaaaggcctctgaagtg
gaagagatcttggatggaaacgatgagaagtataaggcagtgtctatcagcacagaacct
cctacctacctcagagaacagaaggcaaagaggaacaaccagtgggtgccgaccctgccc
aacagctctcatcacctggatgcagtgccgtgctcaacaacgattaacagaaaccgcatg
ggcagggataagaagaggacattccctctgtgctttgatgaccatgacccagccgtgatc
catgagaatgcatcccagccggaggttctggttccaatcaggcttgatatggaaattgat
gggcagaaactcagagatgcgtttacgtggaacatgaatgaaaagttaatgaccccagaa
atgttctctgagattctttgcgatgacctggatttgaatcctctgacttttgttcctgct
attgcctctgccatccgacaacagattgagtcgtacccaactgacagtatcctagaagat
cagtcagaccaacgggttattattaagctaaacatccacgtagggaacatctcccttgta
gaccagtttgaatgggacatgtcagagaaggagaattcaccagagaagtttgccttgaag
ctgtgctcagagcttggcctgggtggggagtttgtcactactattgcctacagcatccgg
ggacagctgagttggcatcagaagacatacgccttcagtgagaaccctttgcccactgtg
gaaattgctattcgcaacacaggggatgctgaccagtggtgccctcttctggaaaccctc
acagatgctgagatggagaagaagatcagagaccaggacagaaatacaaggcgcatgaga
cgtttggccaatactgctccggcctggtaa
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