Chroicocephalus ridibundus (black-headed gull): 134522806
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Entry
134522806 CDS
T10910
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03030
DNA replication
crid03410
Base excision repair
crid03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134522806 (POLE)
03410 Base excision repair
134522806 (POLE)
03420 Nucleotide excision repair
134522806 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crid03032
]
134522806 (POLE)
03400 DNA repair and recombination proteins [BR:
crid03400
]
134522806 (POLE)
Enzymes [BR:
crid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
134522806 (POLE)
DNA replication proteins [BR:
crid03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
134522806 (POLE)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
134522806 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
134522806
NCBI-ProteinID:
XP_063207021
LinkDB
All DBs
Position
13:16604246..16638698
Genome browser
AA seq
2306 aa
AA seq
DB search
MGLRGGGRRAEPGSGGGPEGARRGRGAVGPRVPAAGAEGAAAGRDDGPALSALKRLERSQ
RTDRLDALFGFERPAEPGERTGWLINMHPTEVLDEDRRSVSAVDYYFIQEDGSRFKVALP
YKPYFYIATQKGCEREVSSFLSKKFQGKIAKLETVPKEDLDLPNHLVGLKRNYIKLSFNT
VDDLVKVRKEISPAVRKNRERDQASDVYTAMLASALSGGSLSTDEEGASRKAANQMDNIV
DMREYDVPYHVRLSIDLKIHVAHWYNVRYRGSTHPPEITRRDDLVERPDPVVLAFDIETT
KLPLKFPDAETDQIMMISYMVDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPD
EAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGIDMYQEIGFQKDSQGEYKA
SQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYS
VSDAVATYYMYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHANIIFPNK
QEQEFNKLTEDGHVLDSETYVGGHVEALESGVFRSDIPCRFKMNPAAFDFLVQHVEKTLR
HAIEEEEGLPLDQVTNFQEVCDEIKVKLNSLKDVPNRIECPLIYHLDVGAMYPNIILTNR
LQPSAMVDEATCAACDFNKPGANCQRRMTWQWRGEFMPASRSEYHRIQQQLESEKFPPLS
PEGVPRAFHELSREEQAKYEKKRLADYCRKAYKKIHVTKVEERVTTICQRENSFYVDTVR
AFRDRRYEFKGLHKVWKKKLSAAVETGDASEVKRCKNMEILYDSLQLAHKCILNSFYGYV
MRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIK
STNAKKPKVTISYPGAMLNILVKEGFTNDQYQELQDPASLTYVTRSENSIFFEVDGPYLA
MILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLVKIFQSSVFEAFLKGSTL
EEVYASVAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKR
LAEFLGDQMVKDAGLSCRFIISKKPEGSPVTERAIPLAIFQAEPSVRKHYLRKWLKSPSL
QDFNIRAILDWDYYIERLGSTIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDVYK
QKKINELFTSEGKRQVLANQPPEGTPNSQIGDIEDFGAAKALQPLVPITNKRKRVPAAEE
SQQTSQDLELSQSWREILGPPPPLGTTKEERLVWLRYHQKKWELQARQRRERRKRRRLED
GGETAGGGVVRDALSKGLSSYLRRTARSILDLPWQIVQIAETGQPGLFRLWAVIGSDLHC
IRLSIPRVFYVNQRVPKPEEGTAYRKVNRILPRSNLVYNLYEYSVSEDMYQEHINEINAD
LSAPDIEGVYETQVPLLLRALIHLGCVCMVSRQLVRHLAGREAETFDIDHLEMRSLAQYT
YLEPGSIRHIYLYHSSQGSKALLGLFIPSQRKAAVFVLDKVRSNQMPNLTTLFSVERSAL
LEKAGEELLPPDKHTFEVRAETDPKAIYRAIQRLLLGYKDERRGPTLVAVQSNWDLKRLA
SGIPIIEEFPLVPIRLVDDISYSVLDWQRHAARRMIRHYLNLDTCLSQAFEMSRYYHIPI
GNLPDDISTFGSDLFFSRHLRRHNHLLWLSPTARPDLGGKEADDNRLVMEFDERASVEIN
NPGCYSTVCLELDIQSLAVNTVLQSHHINDMEGGSSMSISFDVIQQASLEDMVTGNQAAN
IPASYDETALCSNTFRILKSMVVSWVKEITQYHNVYADNQVIHFYRWLRSPSSLLYDPAL
HRTLHNMMKKLFLQLVAEFKRLGSSVVYANFNRIILCTKKRRIEDAISYMEYIINSIHSK
EIFHSLTISFSRCWEFLLWMDPANYGGIKGKVDPHIHYGEDTSKRQALEEEDSEEEEVVG
EEEEEEEGEPNVEELLENSWNIAQFLPQAASCQSYFLMIVSAYIVAVYHSMKEELRRNAP
GSTPVKRRSTSQVSQEALGETGAMPGMITFSQDYVANELTQSFFTITQKIQKKMAGSRNA
TEPSDLFPVLPGSYLPLNNPALEFIKYVCKVLSLDANITNQVNKLRRDLLRLIEVGEFSE
EAQFRDPCRSYVLPEVICRNCNFCRDLDLCKDPALSQDGSVLPGWVCANCQAQYDSAAIE
TALVEALQKKLMAFVLQDLVCKKCHGVKETHMPVYCSCAGDFALTISSQTFVEHVNVFQN
IARHYSMAYLLETIEWLLRANPQLQQ
NT seq
6921 nt
NT seq
+upstream
nt +downstream
nt
atggggctgaggggcggcgggcggcgcgccgagcccggcagcggcgggggccccgaggga
gcgcggcgggggcggggggccgtcgggccccgagtgccggcggcgggggctgagggcgcg
gcggctggcagggacgatggccccgcgctgtccgcgctcaagcgccttgagcgatcgcag
cgcacggaccggctggacgcgctcttcggcttcgagcggccggcggagcccggcgagcgg
acgggctggctcatcaacatgcacccgacggaggtgctggacgaggaccggcggtcggtg
agcgctgtggactactacttcatccaggaggacgggagccgcttcaaggtggccctgccc
tacaagccctacttctacatcgccacccagaagggctgcgagcgagaagtgtcctccttc
ctctccaagaagttccaagggaagattgcaaagctggaaactgtccccaaagaagatttg
gacctgccaaatcacttggtgggcctgaagaggaactacatcaagctgtccttcaacacg
gtggatgacttggtgaaggtgcggaaggagatctctcctgccgtgaggaaaaacagagag
cgagaccaagcgagcgatgtctacacagccatgctggcgagcgccctgagcggaggcagc
ctgagcacggatgaggaaggggcctccagaaaggctgccaaccagatggacaacatcgtg
gatatgcgggagtacgacgtaccctaccacgttcgcctctccattgacctgaagatccac
gtggctcactggtacaacgtgcggtaccggggcagcacccacccccctgaaatcacccgc
cgagacgacctggtggagcggccggatcccgtcgttctcgcctttgacattgaaacgacc
aaactccctttgaagttccctgacgcggagacagaccagatcatgatgatctcctacatg
gtcgacgggcagggctacctgatcacaaacagggagatcgtctctgaggacatcgaagac
tttgagtttactcccaagcccgagtacgagggtccgttttgtgtctttaatgaaccagat
gaagctcatttgatccagaggtggtttgaacatgtccaggagaccaaacccaccatcatc
gtcacgtacaacggagacttctttgactggccctttgtggaagcaagagcagcagctcac
ggcatcgatatgtatcaggaaattgggtttcagaaggacagccagggagagtacaaagca
tcccagtgcatccacatggactgcctaaggtgggtgaagagagacagctacctcccagtg
ggaagtcacaacctgaaagcggcagctaaagcaaaactgggttacgatccagtggagctg
gaccctgaagagatgtgccggatggctacggaggagcctcagaccctggccacctattcg
gtgtccgacgccgttgctacctattacatgtacatgaagtacgtgcatcctttcattttc
gccttgtgcaccatcattcccatggagcctgatgaggtgttaagaaaaggatctgggaca
ttgtgtgaggcgctgctgatggttcaggcctatcatgccaacatcatcttccccaacaag
caggagcaggaattcaacaaacttacggaagatggccacgtgctggactcggagacgtac
gtgggaggccatgtggaagcgctggaatctggcgtcttccgcagcgacatcccctgccgc
ttcaaaatgaatcctgctgcctttgacttcctggtgcagcacgtggagaagacgctgcgg
cacgccatcgaggaggaggagggtttgccgttggatcaagtcaccaacttccaggaggtt
tgtgatgaaatcaaggtcaaactgaattccctgaaggatgttccgaacagaatcgagtgt
ccccttatctaccatctagatgtgggggccatgtaccccaacatcattctgaccaacagg
ttgcagccctcagccatggtggacgaggccacatgtgctgcctgcgacttcaacaagccg
ggtgccaactgtcagcgccgcatgacttggcagtggcgaggagagttcatgccggccagc
cgcagcgagtatcaccgcatccagcagcagctggagtcggagaagttccctcccctgtcc
cccgagggagtcccccgcgccttccacgagctctcccgggaagaacaagccaagtatgag
aaaaagcgtctggcagattactgccgcaaggcgtacaagaagatccacgtcaccaaggtg
gaggaacgagtcaccaccatctgccagcgggagaactctttctatgtggacaccgtgcga
gctttcagggaccgccgctatgagttcaaggggctgcacaaggtgtggaagaagaagctc
tctgcagcggtggagacaggagacgcctctgaagtgaagcgctgcaagaacatggaaatc
ctgtatgactccctgcagctggcccacaagtgcatcctcaactctttctacggctacgtc
atgcggaaaggggctcgctggtactccatggaaatggctggcatcgtctgcttcacggga
gcgaatatcatcacccaggccagggaactgatcgagcagattgggagacctctggaactg
gataccgatgggatttggtgtgtcctccccaacagcttcccggagaactttgtcatcaag
tcaaccaatgccaagaagccgaaggtgacaatctcctacccaggtgccatgctgaacatc
ctggtgaaggaaggtttcacgaatgatcagtaccaggaactgcaggatccagcctctctc
acctacgtcacgcgctcggagaacagcatcttttttgaagtggatggaccgtacctggcc
atgatcctcccagcttccaaggaggagggcaagaagctgaagaaaaggtacgcagtattc
aacgaggacgggtccctggctgagctgaagggatttgaggtgaagcgccgaggagagctg
cagctggtgaagatattccagtcttccgtgtttgaagcctttctgaaaggtagcaccctg
gaggaggtctacgcttctgtggccaaggtggctgattactggctggatgtcctctacagc
aaggctgccaacatgcctgattcagagctgtttgagctgatctcggagaaccgctccatg
tcgcgcaagctggaggactatggggagcagaagtccacctccatcagcactgccaagcgc
ctggcagagttcctgggggaccagatggtgaaggatgcagggctgagctgccggttcatc
atttccaagaaaccagaagggtctccagtcactgagagggccatccccctcgccatcttc
caagccgagcccagcgtgcgcaaacactacctccgaaaatggctgaagagcccctcgctg
caggacttcaacatccgtgcgatcctggactgggactactacatcgagagactgggcagc
accatccagaaaatcatcaccattcctgcagccctgcagcaggtaaagaacccagtgcca
cgggtccggcacccagattggctccacaagaaactcctggagaagaacgatgtgtacaaa
cagaaaaaaatcaacgagctcttcacttcggaaggcaagagacaggtcctcgccaaccag
cccccagaggggacacccaactcacagattggcgacatagaggactttggggcggccaag
gcccttcagccactggttcccatcacaaataagcggaagcgcgtccctgcagcagaggaa
agccagcagacttcccaggacctggagctctcccagtcctggcgagagatcctgggtcca
cctccgcccctgggcaccaccaaggaagagcggctggtctggctgcgctaccaccagaag
aagtgggagctgcaggctcggcagcggcgggagcggcggaagaggcggcgtctggaggat
ggtggggagacagcaggtggaggagtggtgcgcgatgccctctccaaggggctgagcagc
tacctgcgcaggacagcacgcagcatcctcgacttgccctggcagatcgtgcagatcgcc
gagaccggccagcctgggctgttcaggctgtgggcggtgatcgggagcgacctgcactgc
atcaggctgagcatcccccgggtcttctacgtcaaccagcgcgtcccgaagccagaggag
ggaacagcctacaggaaggtgaacaggatcctgccccgctcaaacttggtttacaacctg
tatgaatactccgtttccgaagacatgtaccaagagcacatcaacgagatcaatgcggac
ctctctgctccagacatcgagggagtgtatgagacgcaggtgccgctcctcctccgtgcc
ctgatccacctgggctgcgtgtgcatggtcagcaggcagctcgtcaggcacctggcaggg
cgagaggccgaaacctttgacatcgaccacctggagatgcgctcgctggcccagtacact
tacctggagccaggaagtattcgccacatctacctctaccacagctcccagggcagcaag
gcgctcttgggcctcttcatcccctcgcagcgcaaagctgccgtcttcgtgctggacaag
gtacgcagcaaccagatgccgaatctcaccaccctcttctcggtggagcgcagtgcgctg
ctggaaaaggcgggtgaagaactgctgcccccggacaagcacaccttcgaagtgcgcgcc
gagaccgaccccaaggccatctacagagccatccagcggctactgctgggctacaaggac
gagcgccggggccccacactggttgctgtgcagtcgaactgggacctgaagcgtctggca
agcgggatccccatcatcgaggagttccccttggtccccatccggctggtagatgacatc
agctactcggtcctggactggcagcgccacgctgcccgccgcatgatccgccactacctc
aacctggacacctgcctctcccaggctttcgagatgagcaggtactaccacatccccatt
gggaacctccctgatgacatctccacctttggctctgacctgttcttctcgcgccacctc
cgtcgtcacaaccacttgctgtggctctcgcccacggcccgcccggacctgggggggaag
gaggctgatgacaaccgcctggtgatggagtttgacgagagagcctcggtggagataaac
aaccccggctgctactcgacagtgtgtctggagctggacatccagagcctggctgtaaac
acggtgttgcagtcccaccacataaacgacatggaaggaggctccagcatgagcatcagc
tttgacgtgattcagcaggcgtccctagaagacatggtgacggggaaccaagccgccaac
atcccggccagctatgacgaaactgccctctgctccaacactttcaggatcctgaagagc
atggtggtgagctgggtgaaggagatcacgcagtatcacaacgtctacgcagacaaccaa
gtcattcacttctaccgctggctccgctctccttcctccctgctctatgacccggcactg
caccgcacgctccacaacatgatgaagaagcttttcctgcagctggtggctgagttcaag
cggctgggctcctcggtggtttacgccaacttcaaccggatcattctgtgcaccaagaag
cggcgcatcgaggacgccatcagctacatggagtacatcatcaacagcatccactccaag
gagatcttccactcgctgaccatctccttctcccgctgctgggagttcctgctctggatg
gatccagcaaattatggaggtatcaagggaaaagtggatcctcacatccattatggggag
gataccagcaagaggcaagcgttggaggaggaggacagcgaggaagaggaggtggtgggg
gaagaagaggaggaggaggaaggggagccgaacgtggaggagctgctggagaacagctgg
aacatagcgcagttcctgccccaggctgcatcctgccagagctacttcctgatgatcgtg
tcagcctacattgtggccgtgtaccacagcatgaaggaggagctgcggcgcaatgcccct
gggagcactcccgtcaagaggaggagtaccagccaggtgtcccaggaggctctgggggag
acgggggccatgcctggcatgatcaccttctcacaggattacgtggccaatgagctcacc
cagagcttcttcaccatcacccagaagatccagaagaagatggctggttctcgtaatgcc
actgagccctcagacctgttcccagtgctgcctggctcctacctgccgctcaacaaccca
gctctggagttcatcaaatacgtttgcaaggtcctctccctggatgccaacataaccaac
caggtgaacaagctgcgccgggacctgctgcgcctcatcgaggtgggcgagttctcagaa
gaagcccagtttcgggacccctgccgctcctacgtgctccctgaagtcatctgcaggaat
tgcaacttctgcagggacctggacctgtgcaaggaccctgccctctcccaggatgggtcg
gttctgcccggctgggtctgcgccaactgccaggcgcagtacgactccgctgccattgaa
acggcgctggtggaagccctgcagaagaagctgatggccttcgtgctgcaggacctggtg
tgcaagaagtgtcacggtgtgaaggagacgcacatgcccgtgtactgcagctgtgctgga
gacttcgccctcaccatctcttcccagaccttcgtggagcatgtcaacgtcttccagaac
atcgcccggcattacagcatggcctacttgctggaaaccatcgagtggctgctgcgcgcc
aacccccagctccagcaatga
DBGET
integrated database retrieval system
