Chroicocephalus ridibundus (black-headed gull): 134523660
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Entry
134523660 CDS
T10910
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04510
Focal adhesion
crid04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134523660
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134523660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
crid00536
]
134523660
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134523660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF
NDNF
Interfer-bind
hEGF
DUF4998
Big_5
Motif
Other DBs
NCBI-GeneID:
134523660
NCBI-ProteinID:
XP_063208895
LinkDB
All DBs
Position
15:complement(3454471..3529679)
Genome browser
AA seq
1807 aa
AA seq
DB search
MGLPTQVLACAILALLYQHVNGGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDTASGDADLKAEIEPVKNYEEHTVNEENQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAVEGRLDTTPYCSGHGNYSIEICGCICEP
GWKGPNCSEPDCPRNCFNRGLCVQGKCICNEGFAGEDCSQATCPSDCNDQGKCVDGVCVC
FEGYTGTDCSEELCSQGCSVHGRCVSGRCVCHEGFTGEDCSEPLCPNNCHNRGRCVDNEC
VCDEGYTGEDCSELICPNDCFDRGRCVNGTCFCEEGFTGEDCGELTCPNNCNGNGRCENG
LCVCYEGFVGDDCSEKKCPKDCHNRGRCVGGRCICHEGYLGEDCGELRCPNDCHNRGRCI
NGQCVCHEGFIGEDCGELRCPSDCNNRGRCVNGQCVCHEGFIGDDCGELRCPNDCNNRGR
CVNGQCVCDEGYTGEDCGELRCPEDCHNRGRCVEGRCECDNGFTGEDCGELSCPNDCHQH
GRCINGRCVCHEGFMGEDCRDRSCPNDCNNAGRCIDGQCVCEDGYMGDDCSDVSPPTELT
VTNVTDKTVNLEWKHENLVNEYLITYVPTSSGGLDMQFTVPGNQTAATIHELEPGVEYFI
RVFAILKNKKSIPVSARVATYLPAPEGLKFKSVRETSVQVEWDPLNFSFDGWELVFRNMK
KDDNGDITSSLKRPETSYMQPGLAPGQQYNVSLHIVKNNTRGPGLSKVITTKLDAPSQIE
AKDVTDTTALITWSKPLAEIEGIELTYGPKDVPGDRTTIDLSEDENQYSIGNLRPHTEYE
VTLVSRRGDMESDPVKEVFVTDLDAPRNLKRVSQTDNSITLEWKNSHANIDNYRIKFAPI
SGGDHAEVTVPKGNQATTRATLTGLRPGTEYGIGVTAVRQDRESAPATINAGTDLDNPKD
LEVSDPTETTLSLRWRRPVAKFDRYRLIYVSPTGRRNEVEIPVDSTSFVLRGLDAGTEYT
ISLVAEKGRHKSKPTTVKGSTEEEPELGKLSVSETGWDGFQLTWTAADGAYENFIIQVQE
SDNPEETRNITVPGGLRFMNVTGLKANTPYNITLHGVIQGYRTKPLSVETMTGAHPEVGE
LTVSDITPESFNLSWTTTNGDFDVFTIEIIDSNRLLEPMEFNISGNSRTAHISGLSPSTD
FIVYLYGISHGFRTQAISAAATTEAEPEVDNLLVSDATPDGFRLSWTADDGVFDSFVLKI
RDTKRKSDPLELIVPGHERTQDITGLKEGTEYEIELYGVSSGRRSQPVNAVATTVVGSPK
GISFSDITENSATVSWTPPRTRVESYRISYVPVTGGTPNVVTVDGSKTRTKLVKLVPGVA
YDVSIISVKGFEESEPISGTLKTALDSPSGLVVLNITDSEALATWQPAIAAVDNYVVSYA
SEDEPEVTQMVSGNTVEYDLKGLRPATEYTLSVHALKDTQKSETLSTQFTTGLDAPRDLS
ATEVQSETAVITWRAPRAPVTGYLLIYESIDGSVKEVVLKPETTSYSLAELSPSTQYTVK
LQALNGSLKSKTIQTIFTTTGLLYPYPKDCSQALLNGETTSGLYTVYLNGDKAQPLQVFC
DMGEDGGGWIVFLRRQNGKEDFYRNWKTYVAGFGDPTDEFWIGLENLHKITSQGQYELRV
DLGDKGETAYAVYDRFSVGDAKSRYRLRVDGYSGTAGDSMTYHNGRSFSTFDKDNDSAIT
NCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPSSFRNL
EGRRKRA
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccacccaggttttggcctgtgcgatcttagctttgctgtaccagcatgtc
aatggtggactcatcaagcgaattatccggcagaagcgggagactgggctaaacgtgacc
ttgccagaggataatcagcctgtggtttttaaccatgtgtacaacatcaagttgcctgtt
ggctccctttgctctgtggacctggatacagcaagtggtgatgcagacctgaaggcggaa
attgagcccgtcaagaattacgaggagcacacagtgaatgaggagaaccagattgtcttc
acgcaccgtattaacattccccgccgggcttgtggctgtgcagctgccccagacattaag
gatctgctgagcagactagaggagctggaggggctggtatcctccctacgggagcagtgt
gccagcggggctggatgctgtccgaattcccaggcagtggaaggtcgcctggacacaaca
ccctattgcagtgggcacggcaactacagcatcgagatctgcggctgcatttgtgagcca
ggctggaaaggccccaactgctctgaaccggactgcccacgcaactgcttcaaccggggc
ctctgtgtccagggcaagtgcatctgcaatgaaggctttgctggcgaggactgcagccag
gccacctgcccctctgactgtaatgaccaaggcaagtgcgtggatggggtttgcgtgtgc
tttgaggggtacacaggcacagactgcagcgaagagctctgctcccaggggtgcagcgtg
catgggaggtgcgtgagcgggcggtgcgtgtgccatgagggcttcaccggcgaggactgc
agcgagcccctctgccccaacaactgccacaaccgtgggcgctgcgtggacaacgagtgt
gtctgcgacgagggctacaccggcgaggattgcagcgagctcatctgccccaatgactgc
ttcgaccgcgggcgctgtgtcaacgggacctgcttctgcgaggagggcttcactggggag
gactgcggggagctgacctgccctaacaactgcaatggcaacgggcgctgcgagaacggg
ctctgcgtctgctacgagggcttcgtgggggatgactgcagtgagaagaagtgcccgaag
gactgccacaaccgtgggcgctgcgtgggcgggcgctgcatctgccacgaggggtacctg
ggcgaggactgtggggagctgcggtgccccaatgactgtcacaaccgtgggcgctgcatc
aacgggcagtgcgtgtgccacgaaggattcatcggggaggactgtggggagctgcggtgc
cccagtgactgcaacaaccgtgggcgctgtgtcaacgggcagtgcgtgtgccacgaagga
ttcatcggggacgactgtggggagctgcggtgccccaacgattgcaacaaccgtggccgc
tgtgtcaatgggcagtgtgtgtgtgacgaggggtacacaggggaggactgtggggagctg
cggtgccccgaagactgccacaaccgtgggcgctgtgtggaggggcgttgtgagtgcgac
aatggcttcacgggggaggactgcggtgagctgtcttgccccaacgactgccaccagcac
gggcgctgcatcaatgggcgctgtgtgtgccatgagggcttcatgggagaggactgccgt
gatcggtcctgccccaatgactgcaacaatgcaggacgctgcatcgacggacagtgtgtc
tgtgaggacggttacatgggggatgactgctccgatgtgtctcctccaactgaactgact
gtgacaaacgtaacagataaaactgtaaatctggaatggaagcatgagaatcttgtcaat
gagtacctcatcacctatgtccctaccagcagtggtggcttggatatgcagttcaccgtg
ccaggaaaccagacagctgccactattcatgaactggagccgggtgtagaatatttcatc
cgtgtctttgcaatccttaaaaacaagaagagtattcctgtcagtgccagggtagcaaca
tatcttcccgctccagaaggtctgaaattcaaatctgttagagaaacatccgtccaggtg
gagtgggatcctctgaacttttcatttgatggctgggagctggtcttccgtaatatgaaa
aaggatgacaacggagatattaccagcagcttgaaaaggccagagacatcttatatgcag
ccaggtttggcaccagggcaacagtataatgtatcccttcatatagtgaaaaacaatacc
cgaggaccaggactatccaaagtgataaccacaaagcttgatgcccccagccagatcgag
gcaaaagatgtcacagacaccacagctcttatcacatggtccaaacccttggctgaaatt
gaaggcatagagctcacttatggccccaaggacgttccaggggacaggacaaccattgac
ctctctgaagatgaaaaccaatactctattggaaacctgaggccacacacagagtatgaa
gtgacacttgtctctcgtcgaggggacatggaaagcgaccccgtgaaagaagtctttgtc
acagacttggatgctccaagaaacctgaagcgggtatcacagacagacaacagcattacg
ttggagtggaagaacagccatgcaaatattgataactatcgaattaaatttgctcccatc
tctggtggagaccatgctgaggtcacagtgccaaagggcaaccaagcaacaaccagagct
acactcacaggtttgaggcctggaactgaatatggcattggagtgacagcagtgagacag
gacagggaaagcgctcctgctaccattaatgctggcactgatcttgataaccccaaggac
ttggaagtcagtgaccccactgaaaccaccttatcccttcgctggagaagaccagtggcc
aagtttgatcgttatcgcctcatttacgttagccccactggaaggaggaatgaagtggag
atccctgtggacagcacctcttttgtcctgcgagggctggatgcagggacggaatacacc
attagtctggtggcggagaaaggcagacacaaaagcaaacccacaactgtcaagggctca
actgaggaggaacctgagcttggaaaattatcagtgtcagagactggctgggatggtttc
cagctcacctggacagcagccgatggggcctatgagaactttatcattcaggtgcaggag
tcggacaatcccgaagaaacccggaatatcacagtcccaggcggactgcgctttatgaat
gttacaggcctcaaggccaacacaccttataacatcacacttcatggtgtgattcaaggc
tacaggaccaaacctctttctgttgaaaccatgacaggagcgcacccagaagttggtgag
ctaaccgtttccgacattactcctgaaagcttcaacctttcttggacaaccaccaacggg
gacttcgacgtctttactattgaaattattgattctaacaggttgctggagcccatggag
ttcaacatctcaggcaattcaagaactgctcatatctcagggctttctcccagcactgat
tttattgtctacctctatggaatctctcatggtttccgcacacaggcaataagtgctgca
gctacaacagaagcagaacccgaggtcgacaaccttctggtttcagatgctactccagat
ggattccgtctgtcgtggactgcagatgatggggttttcgacagttttgttctaaaaatc
agggataccaaaaggaaatctgatccactggaactaatagtaccaggccatgagcgcacc
caggatataacagggctgaaagagggtactgaatatgaaattgagctctatggagttagc
agtggacggcgttcccaacccgtaaatgcagtagcaaccacagttgttggatctcccaag
ggaatttctttctctgacatcacggaaaactctgctacagtcagctggacaccccctcgc
acccgtgtggagagctaccggatctcctacgtccctgtcacgggaggtactccaaatgtt
gttacagtcgatggaagcaagacaaggaccaagttggtgaagttagtcccaggtgtagcc
tatgacgttagtattatctctgtgaaaggctttgaagaaagtgaacccatctctgggact
ctgaaaacagctctggacagcccgtcaggcctagtagtgttgaacatcacagactcggag
gctctggcaacctggcagccagcaattgctgctgtggataattacgttgtctcctatgct
tctgaggacgaaccagaagttactcagatggtatcaggaaacactgtggagtatgacctg
aagggccttcgacctgcaactgagtatacgctgagtgtccacgcgctgaaggacacgcag
aagagcgagaccctctccacccagtttactacaggactggatgctccaagagatttaagt
gccactgaggttcagtcagaaacagctgtgataacttggagggctccacgtgctcctgtc
acaggttatctcctgatctacgagtccattgatggcagtgtcaaggaagtcgtcctaaag
cctgagacaacttcctacagcctggcagagctgagcccatccacccagtacaccgtgaaa
ctccaggcactgaatggatccctgaagagcaaaacgatccagactattttcaccacaact
ggtcttctctatccttaccctaaagactgctcccaggctctcctgaatggagaaaccacc
tctgggctctacacggtttacctgaatggggacaaggctcagcctctgcaagtcttctgt
gacatgggcgaggatgggggcggatggattgtgttcctgaggcgtcaaaatggaaaggag
gatttctacaggaactggaagacttatgtggctggttttggagatcctacggatgaattc
tggataggtctggagaacctccacaaaatcacttctcagggccagtacgagctgcgtgtg
gatctgggggacaaaggtgagacggcttatgctgtctacgacaggttcagcgttggagat
gcgaagagcagataccggctaagagtggatgggtacagtggcacagcaggtgattccatg
acgtaccataatggaaggtccttctccacctttgacaaggacaacgattctgctatcacc
aactgtgctttgtcatacaagggtgcattctggtacaagaattgtcaccgagtcaatctg
atgggcagatatggtgacaacagccacagtcagggtgttaactggttccactggaagggc
catgaatattccatccagtttgcagagatgaagctgagaccctccagcttccgaaatctg
gaaggaagacgaaagcgagcgtaa
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