Chroicocephalus ridibundus (black-headed gull): 134523696
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Entry
134523696 CDS
T10910
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
Enzymes [BR:
crid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134523696 (SETX)
5.6.2.5 RNA 5'-3' helicase
134523696 (SETX)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134523696 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134523696
NCBI-ProteinID:
XP_063209017
LinkDB
All DBs
Position
15:12237299..12266744
Genome browser
AA seq
2816 aa
AA seq
DB search
MSTCRWCTPSGSDTTEFLKSYASKQLSQEDLEASNDDLCYCLECVVEYHKAREKLPWLHE
VLWELETSRLVAHIEKSMSEEAGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILK
YPYLLLHEKVSELCVEVLCRMEQSHSSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMIEMGKLILLPSHLYDTSNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSYKRTKSEPESDYGDDMVTCSQIVYN
YNTEKPQKDTGWKAAICPDYCPNMYEDMQTLANVLQSDLGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERIQQCDKISEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAIAFTRCTEKASGHCVRGLSAASLQASNSVQHACVQLIRSLL
REGYQIGQHSLCKQYLDKLNLLLRGNLSLGWQLNIQETQELQMCLKQVIRSIKSRAVNTS
VPVGNNANSTTLPTVSTKQEKSTQDDGGKMSAHGSGDLSSPFAVKKEGRDEDCQENLFPR
TKSASEEECRGASKSSRSWTSTEGLCVNIKKELNDFTTQEYDCPQNSLSTKVCGKVQESR
NDYLVAGKFDTDNQHFNPNAQHSDFGRGGELANKCEAGSITPVCLATQSHIGSPEHVYSS
DTKESNTSPSSSSKFKVDAHRLSSLKSKIQKIGWLPKVSQPAKPRDLKNCSLATSASKAE
MEQPKLCTGYPCTSKDCHKHQTVCENEISVDTPSSRSCEKSVDSAFQFELAPTKQVSKET
PLDRISSFKNEPGVQENKDDGILLSGISDTSLKKVSTEEKSSSLLKSVFKTDSDIQTSDW
EQPNLNDLVKYDSKDQISKTFCMDKTSANGHVPPSSENQSDISHAAAPIRPLSVKCESSD
RLFKFSKYFKRENNSVRKEEEDFVKMVSEDNTSTDSQVDRELSKLSLAAYAKSVNFPFDS
SQESSVHHNVGDIKRKVKGAVRSSNDGQSTKSPCDADCLDNQVIIISDSSDEEVVVADKE
ETKKMNENVCPEKQPSTSSSVSDSNTKLESKTPPSPPVSLEDCESQYFEFETEGDVFSVW
QDTQAYSMEATQEYKQDNASTSVDASNSDGLLHDHTNEWGYDVDYVSEDSREEKANLVEK
QIENIPHQKEAGNTEVVTNSTLQESISKGNTEDQLENSADKGAATAKDFTLDSKLTEPRA
STSNISLASKLALKKNSTSPRKNMAKSKVAGTIQRSPKKPVLKPAQNKKLPQSTSKNFQP
VRSMPAVVPPRKVRQCPAPTSTVEKLGLKKAPRKAFELSQRSLESVAQLRSYGKAAGRVA
QKQKIKQIAPQNLSVKHNKKFLACQDLQFLRQTRPKRSVRVKNLAGCSESRNKKVSKVDA
KSMEQKPKSFQLGSVENQREKKREETDSPSANERKFEISSVEEETCLSKMPISSDWSRKS
EDNSMMAPPAPTDSSLSSAALVGDDKDEPSGKGCIVQPEGEKTTSKENGSNPNENSEDDD
DLFLTQLDPVDMELCSEEESVQGIAIASKKPEEMDTAESLQQNESSTIVKCKYTDCIEKV
ENPGEYCSKHAATSSGGDHLFAKPSLLPPSKTGKPSTTKIFSSASSSRNAAFSKDLEGFK
KLSPASKSKVNAAKPVVARPSNAKAIPTGNQTCKPPSFSNVPQPSVSRNVLQPQNRQNDN
ASNIYSRPAREAYYSSFSGVQQRDHSIFVNAVLKWTYEMFVSSSQFGPPSSLLHSLVASV
PVQFHGYNDYFNTFFPLMMLNAFETLAQEWLEKERGREKNYYFYLQNFSADLNTADFTAH
FQEGDLAKQLHPKEDDLIFLVVQKKKDAFGEESEMENHIVNHVGLVTRFSRASGCLTRQR
EQHTVCHLSVQTRGNLSFFINKQVKCVVVGSLVTTHRTFKGLLLLSRSPLAKPIINPSYS
DFCPRDFTTASESAALDVNEYNEGQKRAIETAYAMIKQHPGLPKICLIHGPPGTGKSKTI
VGLLSRVLRENTRNEKATQKTNSKIKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNKQE
PLGNCGDIKLVRLGAEKAINSEVRGFSLDKQVEHRMKRMPSDYDQDIQKKKAALDQKLDM
LSRQRAMHRCEKRESQVLDDEIARLSKERQQLASQLKEVRGHSQKVQTAIILESDIICCT
LSTSGGSLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQLPPT
VKSIKAQEYGYDQSLMARLHRHLEEQVQKNVLRSLPVVQLTLQYRMHPDICLFPSNYIYG
RTLKTDKATEENRCSSEWPFQPYLIFDVGDGREERDNDSFSNPQEVKLVMELIRTIKEKR
KDLGLRRIGIITPYSAQKKKIQDQLDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRANN
TKGSIGFLASLQRLNVTITRARYSLFILGRLKTLMDNKDWNGLIQDAQKRGAIIKTSEKS
YRNDALKILKLKPTVPLPANAGTKKPPLLQACSSSSKMDELANPREASSPWDVPADAGHA
VPQGSRRPQQPPGAQAADSRRGSAPAPVEAPALPANREKPRDPRLASMASRTETKGKEQA
SKDSSRTAQSNPGSTSQQGLHVSSSARDRISRTETSKQPHQTMGQRDMPSTSPYAARHEG
DRRASVLKSGSKAYSEGGQSNSSKRDKDYRVLTRRTSEESLEKRDSNGAKRRKTFH
NT seq
8451 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacacctagtggttctgacaccactgagttcctgaagagc
tatgcttctaaacagttgtcccaggaagatcttgaagcatccaacgatgatctctgttac
tgcctggagtgtgtggttgaataccacaaagcaagggaaaaattgccatggttgcatgag
gtcttgtgggagttggaaacttcccgtcttgttgcccacattgagaaatccatgagtgaa
gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgtcg
ggttatgtgggcccggattttgagaataacctgcgagtgcctcttctagaaatactgaaa
tatccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagtcacagctcctttcaggtctttgaaaaatatccaggaatttatctcttt
ttggtacacccgaatgaagtgattcgtcgatgggccatcctaacggcaaggaatttaggg
aaggttgacagggatgattactatgacctacaggaagtactgacttgcttgttcaaagtt
attgagttggggctttttgagagtccagatatttacagctcttcaatgattgaaatgggt
aaactcatccttctgccatctcacttatatgatacttccaactacaagaactattggcta
ggaatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagat
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctataagaggacaaaa
tctgaaccagagtcagactatggtgatgacatggttacttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggatactggatggaaggctgccatttgtccagactac
tgccccaacatgtatgaagatatgcaaacactggctaatgtgcttcagtctgatcttggc
agagatatgcgtgtccatcatagcacgtttctgtggttcatcccttttgttcagtcgctt
atggatctcaaggacttgggtgtagcatatatagtagaagtcattcactacctctgctcg
gaaattaaagatattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt
ctgctgatcttggtgtccattattgaactacacagaaataaaaagtgcctgcatttgcta
tggattagctcccaagaatgggtggaagcagtggtgagatgtgctaagctcccagctata
gcatttacacggtgcactgaaaaagcgtctggacactgtgtgagaggtttatcagcagca
tctttacaagcttctaactctgtgcagcatgcctgtgtgcagctgatacgcagccttctt
agagaaggctatcaaattgggcagcattctctttgcaagcaatacctagacaaactcaat
cttcttctgcgaggaaatctatctttaggttggcagctgaacatccaggaaacccaggaa
ttacaaatgtgtttaaagcaagttataagaagtataaagagcagagcagtgaatacctct
gtgcctgtaggaaacaatgcaaactccacaactttgcctaccgtttctacaaagcaagag
aagagcacacaagatgatggaggcaagatgagcgcacatggtagcggtgaccttagttca
ccatttgctgtcaagaaggaaggcagagatgaagattgtcaagagaaccttttccctaga
acaaagagtgcctcagaagaggaatgtagaggtgcatctaaaagttcaagatcttggaca
tccacagaaggcctctgcgtgaatattaaaaaggaacttaatgacttcacaactcaggaa
tacgactgcccacagaactctttgtcaacaaaagtatgtgggaaagttcaggaaagtagg
aacgattatcttgtggcagggaaatttgatacggataatcagcactttaatccaaatgcc
cagcattcagattttggaagaggtggagagttggcaaacaaatgtgaagcaggatccata
acaccagtgtgtctggctactcaaagtcatattggttctccagaacatgtttacagctca
gatacaaaggaaagcaatacgtctcctagttcatcttcaaaatttaaagtagatgcacat
agactctcaagtttgaaaagcaagatacagaaaattggatggctcccaaaagtatcgcag
ccagcaaagccacgtgacttgaaaaactgcagtttagcaacaagtgcttcaaaagcagag
atggagcaacctaagttgtgcactggctatccgtgtacgagcaaagattgtcataaacac
cagactgtgtgtgaaaatgaaatctctgttgatactccatcttcaaggagttgtgaaaaa
agcgtcgacagtgcttttcaattcgaactggcccccactaaacaggtgtcaaaagaaaca
ccactagatcgcattagctcctttaaaaatgagcctggtgtgcaggaaaataaagatgat
ggtattttgctttcagggattagtgacacctcactgaaaaaagtatccactgaagaaaaa
tcaagttcattgttgaagtctgtgtttaagacagacagtgacatacaaacttcagactgg
gaacagcctaatttaaatgacttggttaaatatgactctaaagatcaaatttcaaagaca
ttctgtatggataaaacttcagcaaatggtcatgttccacctagctctgaaaaccagagc
gatatatcccacgctgctgctccgattaggccactgtcagtgaagtgtgaatcaagtgac
aggttgttcaaattttcaaaatatttcaagagagaaaacaattcggtgaggaaggaagag
gaggattttgtgaagatggtttctgaagataatacttcgacagactcccaggttgacaga
gaactcagtaaattatctttagctgcgtatgccaaaagtgtcaattttccctttgattca
agccaagaaagctcagtacatcataatgtgggtgacattaaaaggaaagtgaaaggtgct
gtaagatcttccaatgatggccaaagtactaagtctccctgtgatgcagattgccttgac
aatcaagtcattataatttcagactcttctgatgaagaagtagttgtggctgacaaggag
gaaacaaaaaaaatgaatgaaaatgtgtgtcctgaaaagcaaccttcaacttccagcagc
gtttctgatagtaataccaaattagaatcaaagacgccgccaagccctcccgtgtcactg
gaagactgtgagtctcagtactttgaatttgaaacagaaggtgatgtcttttcggtttgg
caagatactcaagcgtatagtatggaagcaactcaagagtataaacaagataacgcttca
acatcggttgatgctagtaattcagatggcttactgcacgatcacacaaatgagtggggc
tatgatgtggattacgtaagtgaggatagcagggaagaaaaagcaaacttggtagaaaag
cagatagaaaatattcctcatcagaaagaagctggtaatacagaagtagtaactaattcc
acattacaagaatctattagtaagggaaacacagaagatcaactggagaattctgcagac
aaaggtgctgctactgctaaagacttcaccctggactcaaaattgactgaacccagagca
tctacatctaacatctcgttagcttcaaagctggcacttaagaaaaatagcacgagccca
cggaagaatatggcaaaatctaaggtagcaggaactatccaaagaagtcctaaaaaacct
gttctaaaaccagcacaaaataaaaaactacctcaaagtacatcaaaaaattttcaacct
gtcaggtcgatgcctgctgtggttcctccaaggaaggttaggcagtgtcctgcaccaaca
tcaactgtagaaaaacttggtctgaaaaaggcaccccgcaaagcatttgaattatcccag
cgctccttagagagtgtagctcaattgcgcagctatggtaaagctgcagggagggttgca
cagaaacagaagattaagcaaattgctcctcagaatttgtctgtaaaacataataaaaaa
tttctagcctgccaagaccttcagtttttgaggcagacgaggcccaaaagaagtgtcaga
gtgaaaaatcttgcaggatgttctgagagtagaaacaaaaaagttagcaaagtggatgca
aaatctatggaacaaaagcctaaaagttttcaactgggatctgttgaaaaccaaagagag
aaaaaaagggaggagactgactctccctctgccaatgagagaaaatttgaaatctcctct
gtggaggaggagacgtgtctctctaaaatgcctatttcttcagactggagcagaaaatca
gaggataacagcatgatggctcctcctgcgcctacggattcaagtctctcttctgctgca
cttgttggagatgataaagatgaaccttcaggaaaaggttgcattgtccagcccgagggt
gagaagacaacttcaaaagaaaatgggtctaacccaaatgaaaacagtgaagatgacgac
gatctgtttttaactcagttagatcctgtagatatggaattatgttccgaggaggaaagt
gttcaaggtattgctatagctagtaaaaaacctgaggaaatggatactgctgaaagcctt
cagcagaatgaatcctcgactattgtgaaatgtaagtacacggactgtatagaaaaagtg
gaaaacccaggagagtactgcagtaagcatgcagccaccagctcgggaggagatcacttg
tttgccaagccttctctcctgccaccttctaaaacaggaaagccttccactaccaaaatt
ttcagctcagcaagttcttcacggaatgcagccttcagcaaggatctggaaggttttaaa
aagctatcaccagcttcaaaaagcaaagtgaatgcagcaaaaccagtggtggccaggcca
tcaaatgcaaaggctataccaactggcaatcaaacatgcaagcctccaagtttcagtaat
gtacctcaaccttctgtttctagaaatgtcctccagccgcaaaatagacagaatgacaac
gcttcaaatatttacagcagacctgcccgagaagcatattattcttccttttctggcgtt
cagcagcgtgatcacagtatctttgttaatgcagtcctaaagtggacttacgaaatgttt
gtgagctccagccagtttggacctccaagcagcctcctgcactccttagtagcctctgtt
cctgtccaatttcatggatacaatgactattttaatacgttcttccccttgatgatgcta
aatgcctttgaaacactggcacaagagtggctagaaaaggagagaggaagagagaagaat
tactacttctacttacagaacttcagtgctgacttgaatacagcagattttacagctcat
tttcaagaaggtgatttggcaaagcagcttcatccaaaggaggacgacttaatctttttg
gtggtccaaaagaaaaaagacgcctttggagaagaaagtgagatggagaaccatatagtg
aatcacgttggtcttgtgacacgattttctcgtgcatctggctgtttaactagacaaagg
gagcagcataccgtctgtcatctttctgtgcaaactcgaggcaatttgtcattcttcata
aataagcaagtgaagtgtgtggtggttggctccctggtgaccacacaccgaactttcaaa
ggtctactactattgagcaggagtcccctggctaaacccatcataaatccaagttacagt
gacttctgtcccagagatttcaccacagcttcagaaagcgctgcattggatgtgaatgaa
tacaatgaaggtcaaaagagagccattgagacagcttatgccatgataaagcaacatcca
gggcttcccaagatctgcctcatccacggaccacctggaacagggaaatcaaaaactatt
gttggacttctgtctcgtgttttgagagaaaacactaggaatgagaaagcaactcaaaaa
acaaattccaagatcaagccaaaccgttttctagtttgtgcaccatcaaatgctgctgta
gatgaactcatgaaaaagatcatcgttgcatttaaggaaaaatgccaaaacaaacaggag
cctttgggaaattgtggtgatatcaaactagtgcgacttggtgctgaaaaggcaatcaac
agtgaagtccggggatttagcctggataagcaagttgaacatagaatgaaacgaatgcca
tctgactatgaccaggatattcagaaaaaaaaagcagctctggatcaaaagctggacatg
ctgtctcgtcagcgtgccatgcacagatgtgagaagagggagagtcaagtgttagatgat
gaaattgccagactttcaaaggagagacagcagcttgcttctcaactaaaggaggttcgg
gggcactctcagaaagtacagacggctatcatcttggagtccgacatcatctgctgcaca
ctgagcacaagcggaggaagtctgctggaatctgctttttggcggcaaggacttgatcct
ttcagctgtgtcattgtggatgaggcagggcagtcctgtgaagttgaaacactgattcca
ctgatccatcgctgtaataaactggtccttgttggagatcccaaacagcttcctcctact
gtaaagtcaataaaagctcaggaatacggatacgatcagtccttgatggcacgtctgcac
aggcacctggaggagcaagtgcagaagaatgttttacgaagcctgccagttgtgcagctg
acactgcagtacaggatgcaccctgacatctgcctcttcccatccaattatatttatggc
aggactctaaagactgacaaagcaacagaagagaacagatgttcttcagagtggccattc
cagccctaccttatttttgatgtaggagatggtcgtgaggagcgagacaatgactctttt
agtaatcctcaggaagtgaagctggtgatggaattaattagaacaattaaagaaaaaagg
aaagatctgggtcttcgtcgcattggaataattaccccttacagtgcacaaaaaaagaaa
atccaagatcaactggacagagtgtttaagaataacagcccaggagaagtagacacagtg
gatgcattccagggacgagagaaagactgcatcatagtgacgtgtgtccgggcaaacaac
actaaagggtcaattgggtttctggcgagtcttcagcgtctgaacgttacaattacccga
gccagatacagcctcttcatccttggaagactgaaaacgctcatggacaataaggactgg
aatgggttgattcaggatgctcagaaaagaggtgccattatcaagacatcagaaaaaagc
tacaggaacgatgctcttaagatcttgaagcttaagccaacagtaccgctcccagccaac
gcagggacaaagaaacctccactcttgcaggcttgttcttccagcagcaagatggatgag
cttgcaaatccaagggaggccagcagcccgtgggatgtccctgctgacgctggccatgca
gtgccccaaggaagcagaaggccccagcagcccccaggggctcaggctgcagactccagg
agaggcagtgcccctgcacccgtggaggcaccggcgcttcctgccaatcgagagaaacca
cgggacccaagactggcaagtatggctagtagaactgaaacaaaagggaaggagcaggcc
tcaaaagacagcagtcggacagcccagagcaatccaggatcaacgtcacagcaaggcctc
catgtgtcctcatctgccagggatcggatttccagaacagaaacttctaagcagccccac
caaacaatgggacaacgtgacatgccttccacgtcaccttacgcagctcggcacgagggt
gaccggagagcttctgtattgaaaagcggttcaaaagcctacagcgaaggaggtcaaagc
aatagcagtaagcgggacaaagactatcgtgttttaacaaggagaacatcagaggaatca
ctagagaaaagagactcaaacggtgccaagcgaagaaagacctttcactga
DBGET
integrated database retrieval system
