Chroicocephalus ridibundus (black-headed gull): 134524160
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Entry
134524160 CDS
T10910
Symbol
EXOSC10
Name
(RefSeq) exosome complex component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134524160 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134524160 (EXOSC10)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
134524160 (EXOSC10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
134524160
NCBI-ProteinID:
XP_063209962
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All DBs
Position
16:5949896..5966520
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AA seq
1030 aa
AA seq
DB search
MAAAAGGGSGSAAAESPAGQEGRGEAAAPPAEAERGSAAAVLPGFADADAFVKYALGTVV
AATKASNGLPQPGDEYDFYRSFPGFRAYCETQGDHLLHCMSKVMQYHGCRSYVKDRSKVT
ELEDKFDMLVDSNDIILERVGILLDEAAGVKKNQQPVLPAGLQPPQTIISSWNRKVGESH
KRTQSETFRLLHAKNISRPQLKFREKIDNSNTPFVPKLFIKPNALKPLPEALTKSGRERK
ERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKKPEPQMYRPIKE
TPCHFITTLDELVDLNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL
RSDMNILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGRHSLDH
LLKLYCNVDADKQYQLADWRIRPLPEEMIRYARDDTHYLLYIYDKVREALWEKGNEQPTQ
LQVVWQRSKDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFAWRDKMARQED
ESTGYVLPNHMLLKIAEELPKEPQGIIACCNPIPPLVRQQINELHLLIQQAREMPLLKSE
IAVTVKKRAPLSNPEKLENTFFGPHDSSRIPMDFQNNSVLEPAPVLEHGCLFSDSERTMN
IQDVQPESSCLVATATVSIFSECDEDEGNEKTLTTAQQKAQRIMESFENPFRMYLPSEQN
PAYVSQSAKFDPSSKIYEISNRWKLMSQTQPQKESKDETKKKAAQQSAARDQAQKVYKEA
TENIVSVRQQAMQEQANKKRERVMSETGTELPKQEKKRPKASQQPEELEAPKQFTPFDYS
KSNFKVFAGSSKSKQSPQFDPAKQAYAGKVRACHEGTEMLVIARTQLGTRWGRKMTFSGS
AECSLTALGTESDACNHELTLCILASSHSGGAFWGPLRLSCCFPPLHTLFTPTPPYITGM
TLRPQHNTTNSQYHIQGALKNLGQSSDFRPWQLCVLPTFSTRQSLGKQSQLREFVFYLLL
IERLKRSKQA
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgccggcggggggagcggcagcgcggcagcggagagccccgccgggcag
gaggggcgaggcgaggcggcagcacccccggcggaggcggagaggggcagcgcggcggcg
gtgctgcctggcttcgccgacgccgacgccttcgtcaagtatgctcttggcacagtggta
gctgcaacaaaggcatctaatgggcttcctcagcctggcgatgagtatgacttctaccga
agcttccctggcttccgcgcgtactgtgaaacacagggtgaccatctccttcactgcatg
agcaaagtgatgcaataccatggctgccgtagctatgtgaaagatcgcagcaaagtgaca
gagttggaagataaatttgatatgctggttgactccaatgacatcattcttgaaagagtg
ggtattttactggatgaagcagcgggagtgaaaaaaaaccagcaaccggtcctccctgct
gggttacagcccccacagacgatcatttccagctggaaccgcaaggtgggagaatctcac
aaaagaactcaatctgaaaccttccgactgcttcatgctaagaatatctctcgaccacag
cttaagtttcgggaaaagattgacaattccaacactccctttgtacctaaactttttatc
aagcccaatgctttgaaacctttgcctgaagccctcacaaaaagtggacgggaacgaaag
gagcggcctgaagacttggatgtaccagctgctttggcagacttcatacaccagcagagg
acacagcaaactgagcaagacatgtttgctcacccttaccagtatgaactggagcatttt
tctccaccagatggagttctcaagaaaccagaaccccagatgtacaggcccatcaaggaa
acaccctgtcattttatcaccacactggatgagctggtagatctaaacgaaaagcttatg
aactgtaaagaatttgcactggacttagagcatcattcctacaggagcttcctgggcttg
acgtgtctgatgcagatttccacccgaacagaagacttcattattgatacactggaattg
cgcagcgacatgaacattctcaacgagaccttcacagaccctgcaattgtgaaggtcctt
catggtgccgattcagatgtggaatggctgcaaaaagactttggtctgtacttggtgaac
atgtttgatactcaccaagctgctcgtctcctcaatcttggcaggcattctttggaccac
ttgctaaagctgtattgcaatgtagatgctgacaagcagtaccagctggctgactggagg
atacgccctttgccagaagaaatgattcggtatgcccgtgatgacactcattacttgctc
tacatctatgataaagtgagggaggcgctgtgggagaaagggaatgagcagcccactcag
ctgcaggttgtgtggcaacgcagcaaggacatctgcctcaagaaatacatcaaacccctc
ttttcagatgaatcctaccttgagctctacaggaggcagaaaaaacatctcaacacgcag
cagctggcagcatttaggttgctgtttgcatggagagacaagatggcgcgtcaagaggat
gagagtacaggatacgtgctaccaaatcatatgctattgaagatagcagaggagcttccc
aaagaaccccagggcatcattgcttgctgtaatccaatcccaccactagttcgccagcag
attaatgaattgcatcttctcattcagcaggcccgggagatgcctcttctcaagtcagag
attgctgtgacagtcaagaaaagagcacctctatccaaccctgagaagctggagaatacc
ttctttggaccacatgacagttcccggattcctatggattttcagaacaactctgtcttg
gagcctgcaccagttttggaacatggctgtctcttttcagacagtgagcggacaatgaat
attcaggatgttcagccagagtcatcatgtcttgttgctactgccactgtcagcatattc
agtgaatgtgatgaagatgaaggaaatgagaagactttaaccactgcacagcagaaagct
cagcgtataatggagtcctttgaaaatccatttagaatgtacctgccttcagaacagaac
cctgcctatgtctctcaatctgcgaagtttgacccgtcatcaaaaatttatgaaatcagc
aatcgatggaagttgatgagtcagacacaaccacagaaggagtccaaggatgaaacaaaa
aagaaagcagcccagcagtcagctgctcgtgaccaagcacagaaggtgtacaaagaggca
acagaaaatattgtgtctgttcgtcagcaagctatgcaggaacaagctaataagaaaagg
gagagggtcatgagtgaaacaggaacagagttgccaaaacaagagaagaaacggccaaaa
gcctcccagcaaccagaggagctggaagcaccgaagcagtttaccccctttgattacagc
aagtccaacttcaaagtgtttgcgggaagcagcaaatcgaagcagtcgccacaattcgat
cctgccaagcaagcttatgcaggcaaggtacgggcatgtcatgaaggaacagaaatgttg
gtgatagcacgtactcagctggggactcgctggggaaggaagatgactttttctggatct
gcagaatgttccctaacagcacttggtactgagagtgacgcttgcaatcatgagctcaca
ctttgtattttagcctcttcccattcaggaggagctttctgggggcccctcagactctct
tgttgtttcccacctcttcatacactgttcacacctacgcccccatatatcacaggcatg
acacttaggccacagcacaacaccacgaattcccaataccatattcaaggtgctctcaaa
aaccttggtcagtccagtgatttcaggccatggcagctctgtgtgttgcccacgttctcc
accaggcagtcattaggaaaacagtctcagctcagagaatttgtattttatttattgcta
attgagagattgaagagaagcaagcaagcataa
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