KEGG   Chroicocephalus ridibundus (black-headed gull): 134524885
Entry
134524885         CDS       T10910                                 
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crid00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134524885 (DDX6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crid03019]
    134524885 (DDX6)
   03036 Chromosome and associated proteins [BR:crid03036]
    134524885 (DDX6)
Enzymes [BR:crid01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     134524885 (DDX6)
Messenger RNA biogenesis [BR:crid03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     134524885 (DDX6)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     134524885 (DDX6)
Chromosome and associated proteins [BR:crid03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    134524885 (DDX6)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 NA-iREase2
Other DBs
NCBI-GeneID: 134524885
NCBI-ProteinID: XP_063211229
LinkDB
Position
18:complement(83804..102041)
AA seq 483 aa
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKQ
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ttgcgaggccctgtaaaacccagcgggggcccaggaggtggaggcacacaaactcagcaa
cagatgaaccagctgaaaaatgccaacacaatcaataacggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatttgagaatcaaaacttcggacgtgacctccacaaaaggaaacgagtttgaagat
tactgtttgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcatccccattgctttgtctggtagggatatcttggctagagcg
aaaaatggaacaggcaagagtggagcctacctcattcctttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgatcgttcccacccgtgaactagccctgcaggtc
agtcaaatctgtatccaagtcagcaaacacatgggaggtgccaaagtgatggcaacaaca
ggaggaaccaatttgcgagatgacataatgaggcttgatgatacagtgcatgtggtgata
gctacccctgggagaattctcgatctcatcaagaaaggagtagcaaaagttgagcatgtc
cagatgatagtattggatgaggcaaataagttgctgtctcaagattttgttcaaataatg
gaagacattattctcacgctacctaaaaacagacagattttgctctactcagccactttt
cctttgagcgtacagaagttcatgaattcccatttgcagaaaccctacgagattaatctg
atggaggagctgaccttgaagggagttacccagtactatgcctacgtaaccgagcgtcag
aaagtacactgcctcaatacactgttttccaggctccagattaaccagtcgatcattttc
tgcaactcctctcaacgggttgaattgctagccaaaaagatctcccagctgggctattcc
tgcttctatatccatgctaagatgaggcaggagcaccgcaatcgtgtgttccacgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgatttcccaaagctggcagagacttatctccat
cgtattggcagatcaggtcgatttggtcatcttggcctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcagctgggaactgaaattaaacccata
ccaagcaacattgacaagagcctgtatgtggcagaataccacagcgaacctgtagaagat
gagaaacagtaa

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