Chroicocephalus ridibundus (black-headed gull): 134525276
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Entry
134525276 CDS
T10910
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134525276 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134525276 (SNRNP40)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134525276 (SNRNP40)
Complex C
U5 SnRNP specific factors
134525276 (SNRNP40)
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GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
WD_LRWD1
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
134525276
NCBI-ProteinID:
XP_063212075
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Position
19:complement(7255421..7269693)
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AA seq
383 aa
AA seq
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MIEQHKRKVPGGGPGPGPAPTPTPTPVAAPGAAPAPDLPLVPTAAKRPRHDLPGAPGAGG
GAGQPPPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWN
VYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV
NSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGID
NDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCV
KIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELA
FHPEEPIILSASSDKRLYMGEIQ
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcacaagcggaaggtcccgggcggcggccccggccccggccccgcgccc
acccccacccccactcccgtcgccgccccgggggccgcccccgcccccgacctcccgctc
gtccccacagcggccaaacggccccgccatgacctgcccggggcgccgggcgccggcggc
ggcgcggggcaacccccccccggggccctgctgcaggcgggcccaccgcgctgctcctcc
ctgcaggcccccatcatgctgctgtcagggcatgaaggagaggtgtattgctgcaagttc
caccccaacggcaacaccctcgcctccgctggcttcgacaggctcatcttgctgtggaat
gtctacggggactgcgataactacgccaccctgaagggacacagcggggcggttatggag
ctgcactataacacggatggcagcatgctcttctcagcatccacagacaaaaccgtggcc
gtgtgggatagtgagactggagagagagtgaagagactgaagggccatacatcattcgtt
aactcctgttacccagcaaggagaggaccccagcttgtctgtacaggcagcgatgatggg
acagtgaagctgtgggatatcaggaaaaaagctgccgtccagacgtttcagaacacgtac
caggtcttggctgtgactttcaatgacaccagtgatcagatcatatctggaggcatcgac
aacgacattaaggtgtgggaccttcgccagaacaagctcacttacacgatgagaggacac
gcggactcggtgacaggcctcagtctcagttcggaaggctcctacctgctctccaacgca
atggacaacacagttcgcatctgggatgtgcgaccgtttgcccctaaagagagatgtgta
aagattttccaggggaacgtacataattttgaaaagaatctcctgaggtgctcttggtcc
ccggatgggagtaaaatcgcagggggatctgccgacaggtttgtctacgtgtgggacacc
acatccagaaggattttgtacaagctgccaggtcacgccgggtcggtgaacgaattggct
ttccatccggaggaacccatcatactctccgcatccagcgacaaaagactgtatatgggg
gagatccagtga
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