| Entry |
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| Symbol |
UPF1
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| Name |
(RefSeq) regulator of nonsense transcripts 1 isoform X1
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| KO |
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| Organism |
crid Chroicocephalus ridibundus (black-headed gull)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:crid00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134526503 (UPF1)
03015 mRNA surveillance pathway
134526503 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:crid03019]
134526503 (UPF1)
Enzymes [BR:crid01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134526503 (UPF1)
5.6.2.5 RNA 5'-3' helicase
134526503 (UPF1)
Messenger RNA biogenesis [BR:crid03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134526503 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
134526503 (UPF1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
22:2699554..2723583
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| AA seq |
1120 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY |
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| NT seq |
3363 nt +upstreamnt +downstreamnt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggtgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccagaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
cctcccggagcgggacagggacctccgggaccgatcgaagcgcaggttaatggacctgac
ggcattctgcaaaacggagctgtggatgataacgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgcgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatctggtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagaccgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgttgtcgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctctcatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacgtcagattacagctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttggaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccagaatatatttggtcctctggtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgactcagatatgcgtcttatgcagggagatgag
atctgcttgaggtacaaaggagacctggcccctttatggaaaggaatcggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacaggatgcagagtgctttaaaaacattcgctgtggatgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccgagtaatatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaatcgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagaacttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgcgcgctg
aaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgatcgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacagcttatt
cttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaggctgcgaaggct
ggtctgtcccagtccctcttcgagaggctcgtggtgctgggcattcgtcccatccgcctg
caagtgcagtaccgcatgcaccccgcgctcagcgcttttccatccaacatcttctacgag
ggttcgctccagaacggtgttactgcagcggatcgtgtgaaaaaaggttttgatttccag
tggccacagccagataagccgatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacttcttacttgaacaggacggaagcagccaatgtggagaagatcactaca
aagctattgaaagctggtgccaaaccggatcagattggcattattactccatatgaaggt
caaagatcctatctggtccagtacatgcagttcagtggttccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgggagaaggactttattatc
ctttcttgcgtgagggccaacgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctcttacaagagcaaggtacggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggaggggccactgaataacctccgggaaagccttatgcagttcagcaagccccggaaa
ctcgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcgcgt
gaggcgattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgattagcgctggccccagccatgtcactgct
atgaacattcctatccctttcaaccttgtgatgccaccaatgccaccaccgggatacttt
ggccaggctaacggaccagccgcaggacgtggggcgcccaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaacagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcgcagatgagtcagcctgggctctcccaaccagaactatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
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