Chroicocephalus ridibundus (black-headed gull): 134526714
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Entry
134526714 CDS
T10910
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134526714 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134526714 (SNRNP200)
Enzymes [BR:
crid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134526714 (SNRNP200)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134526714 (SNRNP200)
Complex C
U5 SnRNP specific factors
134526714 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
134526714
NCBI-ProteinID:
XP_063214939
LinkDB
All DBs
Position
23:1969999..1995159
Genome browser
AA seq
2237 aa
AA seq
DB search
MAARGGGAAEPITASPRRGEEEEGTASQSERGRPEQRHRLPAGAAVHAGSCSPEGSRGAC
WGARRRKRFRVALCFRLTRKWRSAACSGARRWRRGLQPGPAMADVTARSLQYEYKANSNL
VLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQMQEERRAKRRKRDEDRH
DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEV
LAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETY
GVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLH
PRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIK
VLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRR
ERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGSHFMANKRCQLPDGSFRRQR
KGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESDENL
LLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL
ATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLVILDEIHL
LHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNS
FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIR
DMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED
LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP
QYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAETVLGNVQNAKDAVNW
LGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNF
QVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSLSSEFRNITVREEEKLELQK
LLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIV
LNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVKKIEKKNFPFERLYDLNHN
EIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTIAPDFQWDEKVHGSSE
AFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPLPPQYFIRVVSDRWLSCE
TQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQEKFPFFNPIQTQVFNTV
YNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFLDWYEKFQE
RLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNVNLFIVDEVHLI
GGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR
PVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIVFVPSRKQTRLTAINILTT
CASDVQRQRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYLHEGLTAMERRVVEQLFSSG
AVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE
GRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTF
LYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIA
AYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKL
TNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPA
LAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEDRNALLQL
SDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQLEREEEVTGPVIAPLFPQK
REEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGTHNYTLYFMSDAYMGCDQE
YKFSVDVKEAESDSDSD
NT seq
6714 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcgcgggggcggtgcggctgagccaatcacggccagcccccggcgcggggag
gaggaggaaggcacagccagccaatcagagcgggggaggccggagcagcgtcaccgcctc
ccggcgggcgcagcggtgcatgctgggagctgtagtccggaggggagccgcggggcatgt
tggggcgcccgccggcggaagcgcttccgggtggcgctctgcttccgcttgacccggaag
tggcgttccgcggcctgctccggtgcgcggcggtggcggcgcggtctccagcccggccca
gccatggcggatgtgaccgcccgcagcctgcagtacgagtacaaggcgaactccaacctc
gtcctccaagccgaccgctcgctgatcgaccggacccggcgggatgagccgacgggagaa
gtcctgtccttggtgggcaaactggaggggacccgcatgggggacaaggcgcagagaacc
aaaccccagatgcaggaggagagacgagcaaagagaaggaagcgtgacgaggaccggcac
gacatcaacaagatgaagggttacaccctactctccgagggcatcgatgagatggtgggc
atcatctacaaacccaaaaccaaggagacccgcgagacctacgaggtgttgctgagcttc
attcaggcggctctcggggaccagccccgtgacatcctctgcggagccgccgacgaggtc
ctggcggtgctgaagaacgagaagctgcgcgataaggagaggcggaaggagatcgatctg
ctgctgggacagaccgatgatacccgctaccacgtgctggtcaacctggggaagaagatc
acggattacggtggcgacaaggaaatccagaacatggatgacaatatcgatgagacgtac
ggggtgaacgtgcagttcgagtccgatgaggaggaaggcgacgaggacatttacggcgaa
gtgcgcgacgaggcgtccgatgatgacatggagggagacgaagccgttgtccgttgcacc
ctctcggccaaccttgtggcttcgggtgagctgatgagttcaaagaagaaggatctgcat
cctcgagacatcgacgccttttggctccagcggcagctgagccgcttctacgatgacgcc
atcgtttcccaaaaaaaggcggacgaagtgctggagatcttgaagactgccagcgacgac
cgggaatgcgagaaccagctcgttctgctcctgggctttaacaccttcgacttcattaaa
gtcctgcggcagcaccggatgatgatcttgtactgcactttgctggccagcgcacaaagc
gaagctgaaaaagaaaggataatggggaagatggaagcggatcccgagctgtccaagttc
ttgtatcagctgcacgagacggagaaggaggatctcatccgggaggaacgctctcgccgg
gaacgcgtccgtcagtcccggatggatactgacttagagaccatggatctggaccaagga
ggagaggcgctggctccccggcaggtgctggacctggaggatctggtctttgcccaaggt
agtcacttcatggccaacaagcgttgccagctccccgacggctccttccgcaggcagcgc
aagggctacgaggaggtgcacgtgcccgccctgaagccaaaaccttttggctccgaagag
caattggtttctgtggaaaagttacccaaatacgcccaggctggattcgaggggtttaaa
acgctgaaccgtattcagagcaaactctaccgggctgcgctggagtcggatgagaacttg
ctgctgtgcgctcccacgggcgctgggaagaccaacgtggcgctcatgtgcatgttgcga
gaaatagggaagcacattaacatcgacggaaccatcaacgtggacgatttcaagattatc
tacatcgcccccatgaggtccttggtgcaggagatggtgggcagcttcgggaagcgcctg
gccacctacggcatcaacgtggcagagctgacgggggatcaccagctctgcaaggaggaa
atcagcgctacccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaag
ggaggagagcgcacctacacccagctggtgcggctggtcatcctggatgagatacacctc
ctgcacgacgaccgagggcccgtcctggaatctttggtagccagagccatccgcaacatc
gagatgactcaggaggacgtgaggctcgttggcttgagtgccaccctccccaactacgag
gacgtggctaccttcctgagagtcgacccggccaaaggcttgttctattttgataacagc
ttccgaccggtgcccctagagcagacctatgtgggtatcacagagaagaaggcaatcaaa
cgcttccagataatgaacgagatcgtttatgagaagattatggagcacgctggaaagaac
caggtgctggtgttcgttcactccaggaaggagacggggaagactgcccgggccatcagg
gacatgtgcctggagaaagataccctgggcctcttcttgcgggagggctcggcctccacc
gaggtgctgaggaccgaagccgagcagtgcaagaacctggagctgaaggatctccttcct
tacggcttcgccattcaccacgccgggatgacacgcgtggaccggacgctggtggaggat
ctgttcgccgacaagcacattcaggtgctggtctccacagccacgctggcctggggtgta
aatctccccgctcacaccgtcatcatcaaagggacgcaggtgtacagccccgagaagggg
cgctggaccgagctgggtgctctggacatcctgcagatgctgggacgtgccgggaggccg
cagtacgacaccaaaggagaggggatcctcatcacgtcccacggcgagctgcagtattac
ctgtccctgctcaaccagcagctccccatcgaaagtcagatggtgtcgaagctcccggac
atgctgaacgcggagacggtgctcggcaacgtccagaacgcgaaggatgcggtcaattgg
ttgggttacacctacctgtacatccgaatgctgcgctccccgactctctacggcatctcc
cacgacgatctgaaaggggatccgctgctggaccagcgccgcctggacctggttcacact
gcggccctcatgttggacaagaacaacctggtgaagtacgacaagaagacgggcaacttc
caggtgacggagctgggccgcatcgccagccactactacatcaccaacgagacgatgcaa
acttacaatcagctgctgaaacccaccctgagtgaaatcgagctctttcgggtcttctcg
ctgtcctcggagttcaggaacatcaccgtgagggaggaggagaagctcgagcttcaaaag
ttgctggagcgagttcccatcccggtgaaggagagcatagaggagcccagcgccaagatc
aacgtgctcctccaggctttcatctcccagctgaagctggaaggatttgccctcatggcc
gacatggtctacgttacccagtcggccgggcggctgatgcgtgccatcttcgagatcgtc
ctgaaccggggctgggcccagctcaccgacaagaccttaaacctctgcaagatgatcgac
aaacgcatgtggcagtccatgtgccctttgcgccagttcaagaaactgcctgaggaagtg
gtgaagaaaatcgagaagaagaatttcccgtttgaacggctctacgacctgaaccataac
gaaataggagaactcatccgaatgcccaaaatgggcaagacaatccacaaatacgttcat
ctgtttccgaagctggagctctccgtccatttgcaacccattacccgttccaccctgaaa
gtggagctcaccattgctcccgacttccagtgggatgaaaaagtacacggttcgtccgaa
gctttctggatcctggtggaggatgtggacagcgaagtcatcctgcaccacgagtacttc
ctgctgaaagccaagtacgcgcaggacgagcacctcgtcaccttcttcgtgcccgtgttc
gagccgctgcccccgcagtatttcatccgggtggtctccgaccgctggctctcctgcgag
acccagctgcccgtttccttccgccacctgatcctaccggagaaataccctcctcccacc
gagctgctggacctgcagccgctgcccgtctcggcactgcgaaacagcgccttcgagagc
ctctaccaggagaagttccctttcttcaacccaatccagactcaggtgtttaacacggtg
tataacagcgacgacaacgtgtttgtgggcgcccccacgggaagcggcaagaccatttgt
gccgaatttgccatcctgaggatgttgctccagaactcggagggacgctgtgtctacatc
acccccatggaagccctggcggagcaggtcttcttggactggtacgaaaagttccaggag
cgtctcaacaagaaggtggtgttgctgacgggggagaccagcaccgacctgaagctgctg
ggcaaagggaacatcatcatcagcaccccggagaaatgggacatcctctcgcgccgttgg
aaacagcgcaagaacgtccagaacgtcaacctcttcatcgtggacgaagtccatctcatc
gggggcgaaaacgggccggtgctggaggtcatctgctcccgcatgcgctacatctcctcc
caaatcgagcgtcccatccgcatcgtggccctcagctcctccctctccaacgccaaggac
gtggctcactggctgggctgcagtgccacctccaccttcaacttccaccccaacgtccgc
cccgtgcccctggagctgcacattcagggcttcaacatcagccacacgcagactcgcctg
ctctccatggccaagcccgtctaccacgccatcatgaagcactcgcccaaaaagcccgtc
atcgtcttcgtcccgtcccgcaagcaaacacggctcacggccatcaacatcctcaccacg
tgcgcctcggacgtccagaggcagaggttcctgcactgcgcggagaaggatctggttccg
tacctggacaagctgaacgacaacaccctgaaggagacgctggtgaacggggtgggctac
ctgcacgaggggctgacggccatggaacgacgagtggtggagcagcttttcagctccggt
gcggttcaggtgatggttgcctcccgcagcctctgctgggggatgaacatcgccgctcac
ctggtgatcatcatggacacccagtactacaatggcaagatccacgcgtacgtggattac
cccatctacgacgtgctgcagatggtgggccacgccaatcgcccgctgcaggacgacgag
ggccgttgcgtcatcatgtgccagggatccaagaaggatttcttcaagaaattcctctac
gagcccctgccggtggagtcgcacttggaccactgcatgcacgatcatttcaacgccgag
atcgtcaccaagaccatcgaaaacaagcaggacgcggtggattacctcacttggaccttc
ctgtatcgcaggatgacgcagaatccaaactactacaacctgcaaggcgtgtcccacagg
catctctcggatcacctctccgagctggtggaacagaccctgagcgacctggagcagtcc
aagtgcatcagcatcgaggacgagatggacgtggctcctctgaacctggggatgatcgcc
gcctactactacatcaactacaccaccatcgagctcttcagcatgtccctcaacgccaag
accaaggtgcgagggctgattgaaatcatctccaacgccgccgagtacgagaacatcccc
atcaggcaccacgaggacaacttgctgcggcagctggcccaaaaagttccccacaagctg
accaaccccaaattcaacgatccccacgtcaagaccaacctcctgctgcaggctcacttg
tcgcgcatgcagctgagcgccgagctgcagtcggacaccgaggaaatcctcagcaaggcg
atccggctgatccaggcctgcgtggacgtgttgtccagcaacggctggctcagccccgcg
ctggccgccatggagctggcgcagatggtgacgcaggccatgtggtcgaaggattcctac
ctcaagcagctgcctcacttcacctccgagcacatcaaacgctgcacggacaagggggtg
gagagcgttttcgacatcatggagatggaagacgaggaccggaacgccttgctgcagctc
tcggacgctcaaatcgccgacgtcgctcgattctgtaaccgttaccccaacatcgagctg
tcctacgaggtggtggagaaggagagcatccgcagcggggggcccgtggtggtgctggtg
cagctggagcgtgaagaggaggtgacggggcccgtcatcgcaccccttttcccccagaaa
cgcgaggagggttggtgggtggtgatcggcgactccaaatccaacagcctcatctccatc
aagcgcttgacgctgcagcagaaagccaaggtgaagctggatttcgtagccccggccacg
gggacgcacaattacacgctgtatttcatgagcgacgcttacatgggctgcgaccaggag
tacaaattcagcgtggacgtgaaggaggcagaaagcgacagcgattccgactaa
DBGET
integrated database retrieval system
