Chroicocephalus ridibundus (black-headed gull): 134526756
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Entry
134526756 CDS
T10910
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04510
Focal adhesion
crid04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134526756 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
134526756
NCBI-ProteinID:
XP_063215004
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All DBs
Position
24:1920401..1943821
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AA seq
1458 aa
AA seq
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MGQDLLLGHLSLGFPAPSWVQELLSVEGGLWASTRPLVVVEELRVCPSPTFPFGKSCPIR
PTDRPSACRQPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPR
GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPR
GPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPP
GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLP
GERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQ
GPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL
GPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGER
GAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDA
GPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLR
GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEA
GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQ
GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPP
GPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPS
GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPK
GARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQR
GERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRD
GAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMP
GPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPV
GPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQP
EKGPDPIRYMRADEAAGSLRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLC
HPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPNPSSIPKKNWWTSKTKDKKHVWF
AETINGGFHFSYGDEDLAPNTANIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKK
AILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMD
IGGADQEFGVDIGPVCFL
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgggccaggaccttctcttgggccacctctctctgggcttcccagccccatcctgggtc
caggagcttctttccgtggaaggtgggctgtgggcttccacccggccactggtggtggtg
gaggagctgcgggtctgccccagccccacattccccttcggaaagtcctgccccatccgc
cccacggaccggcccagcgcttgtaggcaacctggccccaagggacagaagggcgaaccc
ggtgacattaaagatgtcgtaggaccccgagggcctccgggaccacagggtcccgcaggc
gagcagggacaacgaggggaccgcggcgagaagggggagaagggtgctcccggcccccgg
ggcagggatggagaacccggcacccctggaaatcccggccctcccggtcctcccggacct
cccggcccccccggcctcggtgggaacttcgcggctcagatggcgggcggcttcgacgag
aaggctggaggcgcgcagatgggcgtcatgcagggacccatgggccccatgggaccccgc
ggcccccccggaccttcaggtgctcccggtccccaaggatttcaaggcaaccccggtgag
cccggcgagcccggcgctgctggtccgatgggtccccggggaccgccgggacctcctggg
aaacccggtgacgacggtgagacaggaaaacccggcaaatccggcgagcgcggccccccc
ggcccccagggtgctcgtggcttccccgggacgcccggactccccggagtgaaaggccac
cggggctaccccggcttggacggcgccaagggagaggcaggggctcctggagccaagggc
gaatcggggtcacctggcgagaacggctcccccggccccatgggtccccgcgggctgccc
ggagagagaggacgtcccggcccctccggtgctgcgggtgctcgtggcaacgacggtctc
cccggcccagctggaccccctggacccgtcggcccagcaggagcccccggcttccccggc
gcccccggctcgaagggtgaagctggtcccaccggagcacgaggtcccgagggtgcccag
ggcccccgcggtgaatccggtacccccggctctcccggccccgctggtgcccccggtaac
ccagggactgacggcatccccggcgcaaagggctcggcgggcgccccgggcatcgccggc
gctccaggcttccccggcccccgcggcccccccggacctcagggtgccaccggcccgctg
ggacccaagggacagacgggagaacccggcatcgcgggcttcaaaggcgagcagggaccg
aagggcgagacgggacccgcaggaccccaaggtgcccccgggccggctggcgaggaaggc
aagagaggagcccgcggtgaaccgggtgctgccggccccgtgggaccacctggagagagg
ggtgctcccggcaatcgcggcttccccgggcaggacgggctggctggacccaagggtgct
ccgggcgagcgtggccccgctggcctggcgggtcccaagggagccaccggtgaccccggg
cgtcccggagagcccgggctgcccggagccaggggtctcaccggccgcccaggagatgct
ggtcctcaaggcaaagtcggcccaaccggtgctcccggcgaggacggccgccccggtccc
cccggcccgcagggtgctcgcggccagcccggcgtgatgggtttccccggtcccaaaggt
gctaatggcgagcccggaaaagccggtgagaaaggactccccggtgccccggggctgcgg
ggtctccctggcaaggatggcgagacgggagctgccggccccccaggacccgccggtccc
gcgggcgagagaggagagcaaggagcccccggtccctctggcttccaggggctgcccggg
ccaccaggtccccccggagagagcggcaaacccggagatcagggtgttcctggagaagcc
ggtgcccccggtctcgtcggtcccagaggcgaacgtggcttccccggtgaacgtggctct
cccggcgcacaagggctgcaaggtccccgcgggctccccggcacaccgggcaccgacgga
cccaagggtgcaaccggaccagccggccccaacggcgcccagggtcccccagggctgcag
ggaatgcccggcgagagaggagcagccggtatcgctggtcccaagggagaccggggagac
gtcggagagaagggtcccgagggagcccccggaaaggacggcgcacgcggtctgacaggt
cccatcggtccccccggccccgctggccccaacggcgagaagggtgaatccggcccccct
ggtccatccggcgccgccggtgcccgtggtgcccccggtgagcgtggtgaacccggtgcc
cccggtcccgccggatttgccggccccccgggcgctgacgggcaacccggtgccaaaggc
gagcaaggagagcccgggcagaagggtgacgccggtgctcctggtccccaaggtccctcc
ggagcacctgggccacagggtccaactggtgtaactggtcccaaaggagctcggggtgct
cagggtccccccggagccaccggattccccggcgctgccggccgcgtgggaccacccggc
cctaacggtaacccaggtccccccggcccccccggctctgctggcaaagatggtcccaag
ggtgctcgtggcgatgccggtcccccgggccgtgccggtgaccccggtctccaaggccct
gccggtccccctggcgagaaaggcgaaccgggcgaggatggccccgcgggtcccgacggt
ccccccggtccccaaggtttggcaggacagcgcggcatcgtcggtcttcccggccagcgt
ggcgagagaggcttccccgggctgccggggccatcgggcgaacctgggaaacaaggagca
cccggctctgcaggcgaccgaggcccccccggccccgtgggaccccctggtctgacgggt
cccgccggcgaacctgggcgagaggggaaccccggctctgatggcccccccggcagagac
ggcgcagccggcgtcaagggtgatcgtggcgagaccggccccgtgggtgcccccggcgct
cccggtgcccccggcgctcccggccccgtgggtcccactggcaaacaaggagacagaggc
gagacgggtgcacaaggtcccatgggtccctcgggtcccgctggcgctcgaggcatgccg
ggtccccaagggccacgcggtgacaagggtgagacgggagaggctggagagagagggctg
aagggccaccgcggcttcaccgggctgcagggtcttcccggcccacccggtccctccgga
gaccaaggtgctgctggtcccgccggtccctccggtcccaggggtccccccggccccgtc
ggcccctctggcaaagacggctccaacggcatgcccggccccatcggtccccccggcccc
cgcggacgaagcggggaaccaggtcccgcgggtcctcccggaaacccaggtccccccggt
cctcccggcccccctggcactggcatcgacatgtcggctttcgctggcctgggtcagccg
gagaagggccccgaccccatccgctacatgcgggcggacgaggccgccggcagcctgcgg
cagcacgacgtcgaggtggacgccacgctcaagtccctcaacaaccagattgagagcatc
cgcagccccgagggctccaagaagaacccggccaggacctgccgcgacatcaagctttgc
catcccgagtggaagagcggagactactggattgacccgaaccagggctgcaccttggac
gccatcaaagttttctgcaacatggagacaggcgaaacctgcgtctaccccaaccccagc
agcatccccaagaagaactggtggaccagcaagaccaaagacaagaagcatgtctggttc
gcagagaccattaatggcggtttccactttagctacggcgatgaagacctggctcccaac
accgccaacatccagatgaccttcctccgcctcctgtccaccgaaggctcccagaacgtc
acttaccactgcaagaacagcatcgcctacatggacgaggagacaggcaacctgaagaaa
gccatcctcatccagggatccaacgacgtggagatcagagccgagggcaacagcaggttc
acgtacagcgtcttggaggacggttgcacgaaacacactggcaaatggggcaagacagtc
attgagtaccggtcgcagaagacctcgcgcctgcccattgtagatattgcacctatggac
attggtggagccgatcaggagtttggcgtggatattggcccagtctgcttcttgtaa
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