KEGG   Chroicocephalus ridibundus (black-headed gull): 134526879
Entry
134526879         CDS       T10910                                 
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
  KO
K04840  voltage-gated sodium channel type VIII alpha
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04517  IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    134526879 (SCN8A)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:crid04040]
    134526879 (SCN8A)
Ion channels [BR:crid04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   134526879 (SCN8A)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc Na_trans_cytopl PKD_channel IQ_SCN5A_C ATP-synt_B GPHH IQ
Other DBs
NCBI-GeneID: 134526879
NCBI-ProteinID: XP_063215237
LinkDB
Position
24:complement(1602281..1663387)
AA seq 1978 aa
MAARLLAPPGPDSFKPFTPESLANIEKHIAELKKKQRPKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSKGF
DWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISK
LSSKSAKERRNRRKKRKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSI
MNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIP
IRGRDRRSSYSGYSGYSQGSRSSRIFPNLRRNVKRNSTVDCNGVVSLIGGPPSSMPGGRL
LPEGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPC
WYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFE
HVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELGLADVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
ECVCKISPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKAKVREFMQAH
FKQREADEVKPLDELYDKKVNCIANHTGADINRDIDYQKNGNGTTSGIGSSVEKYIIDED
HMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDETSSSEGSTIDIKPE
VEEVPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFET
FIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTN
AWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVG
AIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEERFEIDIVNNKTDCEALMPP
NSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYI
YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK
PIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINLVFV
IFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLA
RIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGI
DDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVG
IFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQF
IEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGEL
DILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFISRRPVS
TKLENGGTNREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRQKDVRESKC
NT seq 5937 nt   +upstreamnt  +downstreamnt
atggcagcacggctgctcgcaccaccaggccctgatagttttaaacccttcactccggag
tctctggcgaacatcgagaaacacattgcggaactgaagaagaagcagcgtccaaagcaa
gacagcagccaccgggacgacgatgaagacagcaaaccaaaaccaaacagtgaccttgag
gcagggaagaatttgcctttcatctacggggacatcccaaaaggcctggttgctgtgccg
ctggaggactttgacccttattatatgacacagaaaacctttgtagtactaaacagaggg
aaaacactcttccgatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcagtatttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaacccgcccgaatggtcgaagaat
gtggagtatacattcactggtatctatacgttcgaatcacttgtgaaaattattgccaga
ggtttctgtatagatggctttactttcctacgcgacccgtggaactggctagatttcagt
gtgatcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagcgttgaga
actttcagagttctccgagctttgaaaactatctctgttattccaggcctgaagaccatt
gtgggtgccctaattcagtctgtgaagaagctgtcggatgtaatgatcttgacagtgttt
tgcctcagtgtctttgctctcatcgggttgcagctctttatgggcaatttaaggaacaag
tgtgtgatatggccgattaatgtgaatgagactttcctggataacggctcaaagggtttt
gactgggaggaatacaccaacaatatgtcaaacttttacataattcctggcgcccctgat
cctttgctctgtggtaacagctcggatgcgggccaatgtccggagggctacacgtgcatg
aaagcaggacggaaccccaactacggttacacaagctttgacactttcagctgggctttt
ctggctttatttcgccttatgactcaggacttctgggaaaacttgtatcaattaacctta
cgagcagcaggaaaaacctacatgatcttctttgtcttggtgatctttgtgggatcgttc
tacctggttaatctcattttggctgtggtggctatggcttacgaagagcagaaccaggcc
acgctggaggaggcggagcagaaagaggcggaatttaaggccatgttggagcaactgaaa
aagcagcaggaagaagcacaggctgccgccatggtcacttcggcagggaccgtctctgag
gatgctgtggaagacgacggtggggggaggatgtctcggagctcttctgagatttccaaa
ctcagttccaagagcgccaaggagcgtcgaaaccgaaggaaaaagcgaaaggacaaggaa
ctgtcagaaggagatgagaagtgtgacaatgagaaggtgtttaagtcggagtctgaggat
ggcatgaggaggaaagcattcaggctaccagataacaggctaggaaggaagttttccatc
atgaaccagtctctcctcagcatcccaggctccccttttctctcccggcacaacagcaag
agcagcatcttcagctacaaggggcggtttcgtgacccgggttcggagaacgagtttgcg
gatgacgagcacagcaccgtggaggaaagcgaaggcaggagagattccctcttcatcccc
atccgcggccgcgaccgccggagcagctacagcggctacagcggctacagccaaggcagc
cgctcctcgcggatcttccccaacctccgccgaaacgtgaagaggaacagcacggtggac
tgcaacggcgtggtgtccctcatcggcggcccgccttccagcatgcccgggggacgcctt
ctgcctgagggtactactgaaatcgaaatcagaaagaagcctggcgggtctctcctggtc
tcgatggatcaggtgaacgcatcctatggaagaaaggatcgaaccaacagtgtaatgacg
gggttgacaaatacccttgttgaggagctggaggagtcccagaggaagtgtcccccttgc
tggtacaaatttgccaacacgttcttgatctgggaatgccacccgtactggatcaagctg
aaggagatcgtgaacttaattgtcatggatccttttgttgacttggccatcaccatctgt
attgtgctgaacactttgttcatggcaatggagcaccatcctatgaccccagagtttgag
cacgtgctctccgtaggaaatctggttttcactggaattttcacagcagaaatgttcctg
aagctcatcgccatggatccctactattatttccaagaaggctggaacatctttgatgga
tttattgtctccctcagtttaatggaactgggtctggcagatgtggaaggactttctgtg
ctgcgatctttccgattgctgagggtcttcaaactggccaagtcctggcccactctgaac
atgctgataaaaatcatcggtaactcagtgggtgctttggggaacttgaccttggtgcta
gccatcatcgtgttcatctttgctgtggtgggcatgcagctcttcggcaaaagctacaag
gagtgtgtctgcaagatcagtccggagtgtgagctaccccgctggcacatgcacgatttc
ttccactccttccttattgtcttccgtgtgttgtgtggggaatggattgagaccatgtgg
gattgtatggaagtagcaggacaggccatgtgcttgattgtcttcatgatggtcatggtc
atcggaaacttagtggtgctgaacctgttcttagctttgctactgagctccttcagtgcg
gacaacttggcagcaacagatgacgacggggagatgaacaacctgcagatttctgttatt
cgcatcaagaagggcattgcctggaccaaggcgaaagtgcgggagttcatgcaggctcat
ttcaagcagagagaggcagatgaggtcaaacccttggatgaattgtacgacaagaaggtg
aactgcattgctaaccatacgggggctgatatcaacagagacattgattatcagaagaat
ggcaatggcacgacgagtggaattgggagcagtgtggagaagtatatcatagatgaagat
cacatgtccttcatcaataaccccaacctcactgtccgggtgcctattgctgtaggggaa
tcggattttgaaaatctcaacacagaagatttcagcagcgatacagatcccgatggcagc
aaagagaaactcgacgagaccagctcctctgaaggtagcaccattgatataaagcctgaa
gtggaagaagtccctgtggaggcaccggaggagtatctggaccctgacgcgtgcttcaca
gaaggttgcatgcagcgctgcaaatgttgccaggtcaatatcgaggaagggctggggaag
tcttggtggaccttgaggaagacttgttttctgattgtggagcacaactggtttgagact
ttcatcatctttatgatcctgctgagcagcggtgctctggctttcgaggatatttacata
gaacagaggaaaaccatccggaccatcctggagtacgcggacaaggtcttcacttacatt
ttcatcctggagatgttgctgaaatggtgtgcttacggattcgtcaagttcttcacgaat
gcctggtgctggctggatttcctcattgtggctgtctctttagtcagccttatagctaat
gccctgggctactcggaactaggtgccataaagtcccttaggacactaagagctttgagg
cctttaagagcgttgtcccgatttgaggggatgagggtggttgtcaacgccttggttggc
gctatcccttccattatgaatgtgttgttggtctgccttatcttctggctgattttcagc
attatgggggttaacctgtttgccgggaaatatcattactgctttaatgaaacagctgag
gagcgctttgaaatagatattgttaacaacaagacagactgcgaagcgctgatgccaccc
aactccactgagattcgatggaagaacgtgaaaattaactttgacaacgttggggcagga
tatctggctcttctgcaagttgccactttcaagggctggatggacatcatgtacgccgcg
gtggactccagaaagcaagaagagcaacccaagtacgaggacaacatttacatgtacata
tattttgttatcttcattatcttcggctcctttttcaccctgaacttgttcattggtgtc
atcattgacaacttcaatcaacaaaagaaaaagtttggaggtcaagatattttcatgaca
gaagaacaaaagaagtactataatgccatgaaaaaactgggttcaaagaaacctcagaaa
cctattccccgacctctgaaccgcatccaaggagctgtctttgactttgttactcagcaa
gcatttgatatagtcatcatgatgctcatttgcctcaacatggtgaccatgatggtggag
acggacacacaaagcaagcagatggaggacatcctttactggatcaacctggtgtttgtc
atcttcttcacctgtgagtgtgtgctgaagatgttcgccttgcggcactattatttcacc
atcgggtggaacatttttgacttcgtggttgtgattctgtccatcgtgggaatgttcctg
gctgaaatcattgagaagtattttgtgtcacccactctattccgagtcatccgactggct
cgcattggacgtatcctgcgtttgatcaaaggagccaaagggatccgcactttgcttttt
gccttaatgatgtccttgcctgccttgttcaacattggcctcttgctgttcttggtcatg
ttcatcttctccatctttggcatgtcaaactttgcctacgtcaagcatgaggctggcata
gacgatatgttcaactttgagacctttggcaacagcatgatctgcttgttccagatcacc
acatcagctggctgggatgggctcctgctgccaatcctaaaccggcctccagactgcgac
ctggacaaggagcatcctgggagtggttttaagggggattgtgggaacccctcagtgggg
atatttttctttgtgagttacatcatcatctccttcctgatcgtggtcaacatgtacatt
gccatcatcctggagaacttcagcgtggcgacagaggagagcgcagatccactaagtgag
gacgactttgagaccttctacgagatctgggaaaagttcgaccctgacgccacccagttc
atagagtacagcaagctcgcagactttgctgatgctctggaacatcctctccgcgtcccc
aaacccaacaccatcgaactcatcgccatggacctgcctatggtaagtggagacaggatc
cactgtttagacatcctgtttgccttcaccaaacgcgtcctgggggacagtggagagctg
gatatcctgagacagcagatggaggaaagattcgtggcgtccaacccttccaaagtgtct
tatgagcctatcacaacgacgctccggcgtaagcaggaagaagtttcggcggtggtcatc
cagagggcttacagggctcgtttagcacgacggggctttattagccgaaggcctgtctcc
acaaaactggaaaatggaggaacgaacagggagaaaaaggaaggcaccccatctaccgcg
tccctcccctcgtacgacagcgtcaccaagcccgagaaggagaaacagcaacgggcggag
gaaggaagacgagaaagagcgaaaagacaaaaagacgtcagggaatccaagtgttga

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