Corynebacterium riegelii: AK829_02555
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Entry
AK829_02555 CDS
T09801
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
crie
Corynebacterium riegelii
Brite
KEGG Orthology (KO) [BR:
crie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crie03019
]
AK829_02555
Enzymes [BR:
crie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AK829_02555
Messenger RNA biogenesis [BR:
crie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AK829_02555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
SLFN-g3_helicase
ResIII
ABC_tran
AAA_16
Zeta_toxin
SRP54
HA2_N
NACHT
Motif
Other DBs
NCBI-ProteinID:
AKV58233
UniProt:
A0A0K1RA17
LinkDB
All DBs
Position
complement(532062..535925)
Genome browser
AA seq
1287 aa
AA seq
DB search
MNKTRFDQLTIADERRFRRRLRNAKSDAARAQIAKDMQQAAAIVAGRDALVPEITYPDKL
PVSARRDDIMAAVRDHQVVVIAGETGSGKTTQIPKMLLEMGRGRRGMIGHTQPRRLAART
VAERIAEELGQDIGQSVGYAIRFDDRVSDSTAVKLMTDGILLAEMQRDRFLNAYDTIIID
EAHERSLNIDFLLGYLKRLLQKRPDLKVIITSATIDPEAFANHFKDKHGNPAPIIEVSGR
TYPVEIRYRPLEGEDGLADTDMIDGVVDACAELMREGDGDILCFFASERDIRDCMEAIEK
KHWRGVEVVPLFGRLSNAEQHRVFSPHSGRRIVLSTNIAETSLTVPGIHYVVDTGLARIS
RYSTRTKVQRLPIEEISQASANQRSGRSGRVADGIAIRLYSEENFNARPEFTDPEILRTN
LASVILQMISLRLGDVAEFPFIQAPDPKAIRDGLLILHELGAIGDKERGGAPVLTNIGRD
IARIPVDPKMARMLVEADRLGVLEDVTVIVAYMTIQDVRERPLEFQAQADQAHARFKDKE
SDFLSALKLWDYIKDSRDELSGNAFRKRMKREFLHYMRIREWYDLVRQLRDVEKQLGWKG
WNSQNENRDADSIHQSLLTGLLSNIGARDGNSKEYNGARGTRFVIFPGSSISKKPPEFVM
AAELVETSRLFARDVAKIEPAWVERAAGDLLRRNYSEPVWSRKRSSAMVHEKTMLYGVTI
VRDRLVPYHRVDPTGARNMFIRHALIGGDWNRHHMFIEHNEAMLADAAEVEEKVRRRGLV
VDEDTLFEFYDSKLPADVTTARHFDSWWKKQRSKDKHYLDFDPERLLDSDGIDTSEVAFP
AVLKQGSVAYELRYKFEPGDPFDGVTVLVPVPLLAGLDSAGFEWLVPGLREELLTELIRT
LPKQLRRTVVPAPDFAARALPLLEEGIPLDDALTNALRSLGASGINASDFRPDALPGHLR
MTYAAVDRRGDIIDSDKDLDALRRRQAGGIRSSVSKRARGSESETVKAWTAETLGAVPET
VTTVIDGNEVEAYPALEATKGGVKVTVHPTKAAADASMTTATLTLLLRQIQVSPQQMTKG
LPLRHKVAVDHYPHGGAEGLVEDARVAVIRDLLLAHGGAVRTPEEFDALLAEIKPKVAGE
VRRIVVGIAPGLADFANMRAELAKWEGPAINDMRSQLDFYLPKHAITLHGAGHLQHLPRY
IEAMWIRLEDMSLDPDRDADRQMVIDDAKRYLAQKMATLPANRKKSKAYKDILWRIEELR
VSIFAQRLGTPQPVSQRRIEKMTDALR
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaccaggtttgaccagctcactattgcggatgaacgccggtttcgtcggcgt
ttgagaaacgcgaagtctgatgcggcacgcgctcagattgccaaggatatgcaacaggct
gcggcaatagtcgcaggccgcgacgccttggtgcccgaaatcacctatccggacaagctt
cctgtctccgcacgccgcgatgacatcatggctgccgtgcgcgaccaccaggttgtggtg
atcgcaggtgaaaccggttcgggtaaaaccacccagattccgaagatgctgctggagatg
ggccgtggtcgccggggcatgattggacatacccagccgcgaaggctggccgctcgcacc
gtggcggaacgtattgcagaggagctcggccaggacattggccagtccgtgggctacgcc
attcgctttgatgatcgcgtatctgactccaccgccgtcaagctgatgacagacggcatc
ttgctggcggagatgcagcgggaccgcttcctcaatgcctacgacacgatcattattgac
gaggcgcacgaacgctcactcaacatcgatttcctgctgggctacctcaagcggctcctg
caaaagcgtccggatctcaaggtgatcatcacctcagcaacgattgatcctgaggcattt
gcgaatcacttcaaggacaagcacggcaacccggcgccaattattgaggtctctggtcgc
acctaccctgttgagatccgctaccgtccgctggaaggtgaagacgggctggcagacact
gacatgattgacggtgtggtggatgcctgcgcggagcttatgcgcgaaggcgacggcgac
atcttgtgctttttcgcatctgagcgtgacatccgtgactgcatggaggcgattgagaag
aagcactggcgtggcgtcgaggttgtgccactgtttggtcgactctccaacgcggagcag
cacagagtcttctcgccgcattccggcaggcgcattgtgctgtctaccaacatcgcggag
acttcactgacggtgccgggtattcactacgtggttgatactggccttgcgcgtatttcg
cgttactccacgcgcaccaaggtccagcgtcttcccattgaggagatctcccaggcgtct
gcaaatcagcgctcggggcgttcgggacgtgtggcagacggtattgctatccgcctctac
tcggaggagaacttcaacgctcgcccagagttcacggacccggagattctgcgtaccaat
ttggcctcggtgattttgcagatgatctcgctgcggcttggtgatgttgcggagttcccc
ttcatccaggcaccagatcccaaggcgattagagatggcctgcttatcctccatgagctg
ggcgccattggggataaggagcgcggcggcgcgccagtgctcaccaacatcggacgcgac
atcgcgcgtatcccggtggatccgaagatggcgcgcatgctcgttgaagctgaccgcctc
ggcgtgcttgaagacgtcaccgtgatcgtcgcatacatgaccatccaggacgtgcgcgaa
cgcccgcttgagttccaggctcaagccgaccaggcacacgcgcgctttaaggacaaggaa
tccgatttcctctcagcgctcaagctgtgggattacatcaaggattcccgcgatgagctt
tctggcaacgcgtttcgcaagcggatgaagcgcgaatttttgcactacatgcgcattcgt
gaatggtacgacttggtgcgtcagctccgcgatgtggaaaagcagcttggttggaagggc
tggaacagccaaaacgagaatcgtgatgctgactcgatccaccagtcgctactgaccggt
ttgttgtccaacatcggtgcacgcgatggcaattctaaggaatacaacggggctcggggg
acgaggtttgtgatcttcccggggtcgtcgataagcaaaaagcccccagagtttgtgatg
gccgcagagctggtggagacctcgcgactgttcgcgcgtgatgtagccaagattgagcca
gcgtgggtcgagcgagccgcaggcgatttgctgcgccgcaactattcggagccggtgtgg
tcgcggaagcgctcgagtgcaatggtgcacgaaaagaccatgctgtatggcgtaaccatc
gtgcgcgatcgtcttgtgccctaccaccgggtggatccgacgggtgcgcgaaatatgttt
atccggcatgcgctgattggcggcgattggaaccgccaccacatgttcatcgagcacaac
gaggcgatgctggccgatgccgcagaggttgaggagaaggttcgccgccgcggtttggtg
gtggatgaggacacgctgtttgagttttatgactcaaagctgcctgccgatgtcacaact
gcacgccacttcgactcatggtggaagaagcagcgcagcaaggataagcactacctggat
tttgatccggagcggctgctggattcagacggcatcgatacctccgaggtggcgtttcct
gcggttctcaagcaggggtcagtggcttatgagctgcgctacaagtttgagccgggtgat
ccgttcgacggtgtcaccgtgctcgtgcctgtaccgctgctggcgggtctcgactccgcc
ggctttgagtggttggttccgggtctgcgcgaggagttgcttacggagctgattcgtacc
ctgccaaagcagcttcgcaggacggtggtgccggccccagatttcgctgctcgtgccctg
cccctgcttgaagagggcatcccgcttgacgacgctttgacgaacgccctgcgctccctc
ggcgccagcggcattaatgcctcagacttccggccggacgcgctgcctggacacttgcgg
atgacgtatgcggcagtggatcgccgcggcgacatcattgacagtgataaggatctggat
gcgctgcgtcgcaggcaggcgggcggtatccgttcctcggtatccaaacgcgcacgtggc
agcgagtccgaaacggtaaaggcctggactgcggaaaccttgggtgccgtgccggaaact
gtaactacggttattgacggcaatgaggtggaagcctacccagcgctggaggcaactaag
ggtggcgtgaaggtgacggtgcaccccacgaaggcagcggcggatgcgtcgatgaccacg
gcaacgctgactttgctgcttcgccagatccaggtgtcaccacaacagatgacgaagggg
ctaccgcttcgccacaaggttgcggtggaccactacccccatggtggtgctgaaggtttg
gtggaagatgcccgcgtggccgtcatccgtgacctactgcttgcccacggtggtgccgtg
cgcacccctgaagagtttgacgcgctgcttgcagagattaagccgaaggtagccggcgag
gttcgccgcatcgttgtcggcattgcacccggtcttgcggactttgccaatatgcgcgca
gagcttgccaaatgggagggcccggcgattaatgatatgcgcagtcagctggacttctac
ctgccaaagcacgcgattaccctgcatggcgctggccacttgcagcacttgccgcgatac
atcgaggcgatgtggattcggcttgaagatatgagtttggatccggaccgggacgcggat
cgccagatggtgattgatgacgcaaagcgttaccttgcccagaagatggcaacgcttccg
gcgaaccggaaaaagtcgaaagcctacaaggacattctctggcggattgaggagcttcga
gtcagcatcttcgcacagcgtttgggcacaccgcagccggtgagccagcgccgaattgag
aagatgactgacgcgttgcgttag
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