Cylindrospermopsis raciborskii: L3I90_00225
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Entry
L3I90_00225 CDS
T08337
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03410
Base excision repair
crk03430
Mismatch repair
crk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L3I90_00225 (recJ)
03430 Mismatch repair
L3I90_00225 (recJ)
03440 Homologous recombination
L3I90_00225 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_00225 (recJ)
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
L3I90_00225 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
L3I90_00225 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3I90_00225 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UJS04740
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Position
complement(47106..48929)
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AA seq
607 aa
AA seq
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MTPQKNNIKLPYQRWHIAKQNEELAEKLASVNNVSPIIGQLLINRGMETPEIATRFINPE
CINLPSPLDEFPDLVPSVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGSLGANID
YAIPSRMHEGYGINKRIVEEFHSEGVSLILTVDNGIAALEPIARAKELGLKVIITDHHDL
PPQLPVADAILNPKLISLSSPYRGLAGVGVAYVLAVCLAQHLQKITGLVQPMLDLFTLGT
IADLAPLTGVNRRWIKRGLKSLYKSNLPGVQALIQVSGVQPSMGENQQVSKAQNSKSLKP
EDIGFRLGPRINAVGRIGNPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEA
ILLVEDLYAQNLHQDRVLVVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNHLVRGSA
RGIPEFNVFDALEFSSDLLYKYGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKP
LLRIDGQINFCQINRDLFQQLNILHPCGIENPDPIFWTPQVRVVEQQMIGKGSIKLTLAQ
IIDNTRYEIKALAWRWGDYFPLPFTIDIAYKLRENNFNGANDIELELVGVRLPQQYHQSC
NYSFDGN
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgactccacagaaaaataatataaaattaccatatcaacgctggcacatagcaaagcaa
aatgaagaattagctgaaaagttagcaagtgtcaataatgtttctcctattataggtcag
ttgttaattaatagaggtatggaaacaccagaaatagctactagatttatcaatcctgaa
tgtataaatttaccctctcccttggacgagttccccgatttagttcccagtgtggaatta
ttggcaagtgctattaggaaccatgagaaaattgctatctgcggcgattatgatgctgat
ggcatgactagtacagccttgctgttacgtagtcttggatctttaggtgcaaacattgac
tatgctattcccagtagaatgcacgaggggtatggaattaataaacgaattgtggaagaa
tttcacagtgaaggggtcagtttaattctaaccgtagataatggtattgctgctcttgaa
cctattgcaagagcaaaagagttgggtttgaaagtgattattacggatcaccatgattta
cctccccaattaccagttgctgatgcaattcttaaccccaaattaatatctctatcttcc
ccttatagaggtcttgctggtgtgggtgtagcctatgttttagctgtatgtttagctcaa
catttgcaaaaaatcacaggtctggttcaacctatgttggatttatttaccttgggaact
attgctgacctagctcctttaaccggtgttaatcgtcgttggataaaacggggcttaaaa
tcattatataagtccaatttaccgggtgttcaggctttaattcaagtctctggtgtacaa
ccaagtatgggagaaaatcagcaagtatctaaggcacaaaattctaagtctttaaaacca
gaagatattggatttcgtctaggaccaagaatcaatgctgtgggtagaattggcaatcct
caaattgtgatcgaattactaactactgatgatatgggaattgctttagaacgagcaatg
caatgtgagcaaataaatgctgaacgtcaaaaaatctgtgaggaaatccaaggagaggca
atattgttggttgaagatttatatgcacaaaatttgcatcaagaccgagttctggtcgta
gtcaaagataattggcatcatggtgtaattggcattgtcgcttctcgtctggtagaacgt
tatggagttcctgtctttatcggtacttacgaaaataatcacctggttcgtggttccgca
aggggaatacctgaatttaatgtgtttgatgctttggagtttagcagcgatttactatat
aaatatggtggacataaagctgctgctggattttctttacccgcagctaatctagaaaat
tttcgattgcgtttatcagagtttgctaatcaatgtctggaagttcaacatctcaaacca
ctattaagaatagatggtcaaatcaacttttgtcagatcaatcgggatttattccaacag
ttgaatattcttcatccctgtggaattgaaaaccctgaccctatcttttggactccccaa
gtacgagtggtagaacagcaaatgattggtaagggtagtattaagttaactttggctcaa
atcatagataatacaagatatgaaattaaagctttggcttggcgatggggtgattatttc
cctttacccttcactattgatattgcttacaagttacgggaaaataactttaatggtgcg
aatgatattgagttggagttagtcggtgttaggttacctcaacagtatcatcaaagctgc
aattacagctttgacggaaactag
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