Cylindrospermopsis raciborskii: L3I90_03200
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Entry
L3I90_03200 CDS
T08337
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03030
DNA replication
crk03430
Mismatch repair
crk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3I90_03200 (holA)
03430 Mismatch repair
L3I90_03200 (holA)
03440 Homologous recombination
L3I90_03200 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crk03032
]
L3I90_03200 (holA)
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_03200 (holA)
Enzymes [BR:
crk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L3I90_03200 (holA)
DNA replication proteins [BR:
crk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L3I90_03200 (holA)
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L3I90_03200 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
WHD_ROXA
nSTAND1
FAM186A_PQQAQ
Motif
Other DBs
NCBI-ProteinID:
UJS05274
LinkDB
All DBs
Position
708426..709451
Genome browser
AA seq
341 aa
AA seq
DB search
MPIYIYWGEDDFAIEKAVTLLRDRILDPLWTSFNYTTFLPDQGDSVIQALNQVMTPSFGA
GGRLVWLINSNLCQNCPENIFSELKRTLPVIPESSFLLVTSPNKPDERLKSTKLLKQFAD
FREFSLIPPWKTELLVQAVNQAAQDIGIKLTPQVAETLAESIGNDSRLLYTEIEKLRLYL
ASSNIPLTSTIVTQLVRNTTHNTLQLAAAIKAGDSAKALGILADLIGAAEPGLRIVATLT
GQFRTWLWVKMMMESGERNPQAIAQGAEVSNPKRIYFLQQEVKSLSVEQLVFSLPLLLEL
EVSLKQGASEILTLQTKVIELCQLYQKSGTFQPENKSNLLT
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgccaatctatatttattggggtgaagatgattttgctatagaaaaagcagttacctta
ctgcgcgatcgcattcttgaccctttatggactagtttcaattatactacttttctccct
gaccagggtgattctgtaattcaggccctgaatcaagttatgacacccagttttggagct
ggtgggaggttagtttggttaatcaactccaacttgtgtcaaaattgtccggagaatata
ttctcggaactaaaacgcaccttacccgtcataccagaaagttcctttttgttggtgact
agtcccaacaaacccgatgaacgtctcaagtccacaaaactactcaaacaatttgctgat
ttccgcgagttttccctcatcccaccctggaaaactgaattactagtccaagctgtgaat
caagctgctcaggatattggcatcaaactaacaccacaagttgctgaaactttggcggaa
tctattggtaatgatagccgacttctctacacagaaatagaaaaattgcgtctttattta
gccagtagtaatattccactcactagtacaattgtaacccaactagtcagaaataccact
cacaacaccctccaattagctgcggccattaaagcaggtgattcagccaaagcattaggc
attttagcagatttaattggcgctgctgaaccaggactaagaatagttgctaccctcacg
ggtcaattccgtacttggctatgggtaaaaatgatgatggaatcgggagagcgcaatccc
caggcgatcgcccagggtgcggaggtaagcaatcctaaacggatttacttcttacagcaa
gaagtcaagtctctatctgtagaacagctagttttttccttacctctactgttggaatta
gaagttagtctcaagcaaggagcttctgaaatccttacccttcaaactaaagtaattgaa
ctttgtcaactatatcagaaatccggaacttttcaacctgagaataaatcaaatctacta
acataa
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