Cylindrospermopsis raciborskii: L3I90_03395
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Entry
L3I90_03395 CDS
T08337
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3I90_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crk03019
]
L3I90_03395
Messenger RNA biogenesis [BR:
crk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3I90_03395
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
FIST_C
Motif
Other DBs
NCBI-ProteinID:
UJS05309
LinkDB
All DBs
Position
complement(748689..750458)
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AA seq
589 aa
AA seq
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MARNEVNSTLKIIPLGGLHEIGKNTCVFEYEDEIILLDAGLAFPTGAMHGVNIVLPDTTY
LRENKHKIRGMIVTHGHEDHIGGIAFHLKQFDIPVIYGPRLALAVLEGKLEEAGVSDRTQ
LRKVMPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPIGVVIHTGDFKIDHTPIDGETF
DLQRLAEHGEKGVLCLLSDSTNAEVPGFTPSERAVYPNLDRVFSQARGRLFVTTFASSVH
RINIVLQLAKEHNRVVTVIGRSMLNFIAHARNLGYIKCEDSLFQPLHTIRNLPDENVVIL
TTGSQGETMAAMTRIANKEHPHIKIREGDTVVFSANPIPGNTIAVVNTIDKLMIQGAKVV
YGREKGVHVSGHGCQEEQKLMIALTRPKFFVPVHGEHRMLVKHSETAQSMGIPRENMVII
RNGDVIELTENSIRIAAQVPSGIELVDTTSSGMVSAKVLQERQTMAAEGLATVAAAIDWN
GKLLAKPEIYLRGVVTSIERSLLLKWVQQRIEEILSVRWSDFCTAGSNDVDWGGLQDTLE
KELGRSLRRELQCQASVTLLLQVPEQLPETTVKASDGRRRRPRSTAVAS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaacgaagttaattctaccctcaaaattattcccttggggggactgcacgaa
atagggaaaaacacatgtgttttcgagtacgaggatgaaattatcctcttggatgctggt
ctggctttccctacaggagctatgcacggtgtgaatatagtgttacctgacaccacatac
ttgagagaaaataagcataagattcggggaatgattgttacccatggtcacgaagaccac
ataggtggcatagcatttcacctgaaacagtttgatatcccagttatttacggtcccaga
ttggcactagctgtactggaaggaaaactagaagaagcaggagtgagcgatcgcacccaa
ttaagaaaagtaatgcctcgtgacgtggtgcgcattggcaaatccttttttgtggaatat
attcgcaatacccattccatagcggacagttttacggttgccattcatactcccataggc
gtggtaattcacacaggggatttcaaaattgaccacacgcccatagacggagaaaccttt
gatttacagcgtctagcagaacatggagaaaagggagtattatgtctcctgagcgactca
accaatgcggaggtgccaggtttcactccttcagagcgtgcggtttatcctaatctggat
cgggtattctcccaagcgaggggaagactatttgtcaccacatttgcttccagcgttcat
aggatcaacatagtgttacagctggccaaggagcataatcgggtggtaacagtcataggg
cgttcaatgttgaacttcattgcccatgcccgtaacctgggttacatcaagtgtgaagat
agtctatttcagcccttacataccattcgcaacttaccggatgagaacgtagtgattctg
accactggttcccaaggggaaaccatggccgccatgacccgcattgccaataaagaacac
ccccatatcaaaattcgagagggagacacagtagttttctctgccaaccccattcctggt
aatactattgccgtggtcaacaccattgacaaactaatgatccagggagccaaagtagtc
tacggtagggagaaaggagtacacgtttctggtcatggttgtcaggaagagcagaaactg
atgatagctctaacccgtcctaaattttttgtacctgtccatggggaacatcggatgttg
gttaaacactcggaaaccgcccaaagtatgggaattccccgagaaaatatggtaatcatc
cgcaatggagatgtgatagaactaacagaaaactccatccgcattgcagctcaagtcccc
tccggtatcgagctagtagataccaccagttcaggaatggtgagcgccaaagtcctacaa
gaaagacaaactatggcagcagaaggactagcaacagtagcagcagctattgattggaat
ggcaaactgctggctaaaccagaaatctacctccgaggtgtagtcaccagcatcgagcga
tcgctactattgaagtgggtacagcagcggattgaagaaattctgagtgttcgttggtct
gatttttgcaccgcaggtagtaatgatgtagactggggtggactgcaagacaccctagag
aaagagttaggtcgttcactgcggcgggaattacaatgtcaggcttccgtaacattgtta
ctacaagttcccgaacaattacccgaaaccacagttaaagcttctgatggtagaagaaga
aggccccgttctaccgctgtggcttcatag
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