Cylindrospermopsis raciborskii: L3I90_07305
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Entry
L3I90_07305 CDS
T08337
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3I90_07305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crk03019
]
L3I90_07305
03016 Transfer RNA biogenesis [BR:
crk03016
]
L3I90_07305
Enzymes [BR:
crk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
L3I90_07305
Messenger RNA biogenesis [BR:
crk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L3I90_07305
Transfer RNA biogenesis [BR:
crk03016
]
Prokaryotic type
tRNA degradation factors
L3I90_07305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_1st
KH_N4BP1_2nd
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
UJS06016
LinkDB
All DBs
Position
complement(1630277..1632433)
Genome browser
AA seq
718 aa
AA seq
DB search
MAEIDKSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEAREGVDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDE
LVPPDVLAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGS
PDGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVHQEPPIPDQSL
ENYIRDRASEEIKKILAQFELTKTERDAALDVVKSAIASSIESLGEEDPIRIAATANGQV
LENTFKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVL
SACTLGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERA
ILPVLPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIK
EGSEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAVEQARDAR
LHILEKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIE
DSGIVTISAIDEGRAKRAKSIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLTRLGIHPDQAAAAREAAATNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattgataagtcaatatcctttgatggacgggatattcgactgaaggtcgga
ttgttagcccctcaagcaggtggttcggtgttgatagaatcgggagacactgccgttttg
gtgacggccacaagatcagaagccagagagggcgttgattttcttcccctaacagtagat
tatgaagaaagactgtacgctgctggaagaatacccggtggtattatgcgccgcgagggt
cggccaccagaaagggctattttaactagtcgtttgattgaccgcccattgcgtcccctg
ttcccctcctggttaagagatgacctgcaaattattgctttgaccctctctatggatgag
ctggtgccacccgatgtgttggctgtaaccggagcttctatcgctactctgattgcccaa
attcctttttatggaccaatggcagcagtacgtgtgggtttagttggggatgattttatt
attaaccctacctacgccgaaatagaagctggtgatttggatttggtggttgctggctcc
cccgatggggtaattatggtggaagcaggagcaaatcagttacctgaacgggatattatt
gaggccattgactttggttatgaagcagttagggatttaattcaagcacaacgagattta
attgctgaactcggtttgactattgttcaccaagaacccccaatacccgatcaaagtctg
gaaaactatatccgcgatcgcgctagtgaggaaattaaaaaaatactcgctcagtttgaa
ttgactaaaactgaacgcgatgctgctctggatgtagttaaaagtgcgatcgcatctagt
attgagtctctgggggaggaagatcctattcgcatagctgcaacagctaatggtcaagta
ctggagaacacttttaaagacattactaagtacttcatgcgtcgtcaaattgttgaagac
aatgtgcgagtggacggtcgtaagttagatgaagtgcgtcctgtttcatcccaagtagga
gtcctacctcgtcgtgttcatggtagtggattatttaatcgtggattaactcaagtatta
tcagcttgcacccttggcacgccaggagatgcccaaagtttaagtgatgatttacaagta
gatcagtccaaacgttacttacatcattacaatttccctcctttctccgtaggtgaaact
aaacccttgcgggcccctggaagacgggaaatagggcatggagctttagcagaaagggca
attttgcctgtgcttcctaccaaagagcaattcccctacgtcattagggtggtctcggaa
gttctttcttccaatggctctacctctatgggatcagtttgtggatctaccctagctctc
atggatgcaggtgttcccattaccaaacctgtcagcggtgctgctatgggtttgattaag
gaaggatcggaagtacgggtactaactgatattcaaggtattgaagactttttaggcgat
atggactttaaagtggccggtactgatacgggcatcacggcactacaaatggacatgaaa
atctctggattgtctctagatgtaattaaacaagccgtggagcaagccagggatgctcgg
ttgcacattttggagaagatgttgcaaactatagacaaaccacgaactgaaacttcacct
tttgcaccacgactagtcacaattaaaattgatcctgatatgattggtttagtcatcggt
ccaggcggtaagaccatcaagggtattacggaagagacgggtgctaaaatcgacattgaa
gatagtggtattgtgaccatttccgccatagatgaaggtagagccaaacgagcaaaaagt
ataattcagggcatgacccgcaagctccacgagggagatgtatatgtgggtcgtgtgaca
aggattataccaattggggcctttgtggaatttttacctggtaaggagggcatgatccat
atttcccagctggccgattatcgtgtaggtaaggtggaagatgaagtagctgttggtgag
gaggtaattgtcaaggttcgtgaaattgatagcaaggggagaattaacctgacacgattg
ggcattcatccagatcaggcagctgctgcacgagaagccgcagcaacaaatcgctag
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