Cylindrospermopsis raciborskii: L3I90_09535
Help
Entry
L3I90_09535 CDS
T08337
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
crk
Cylindrospermopsis raciborskii
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crk03016
]
L3I90_09535
Enzymes [BR:
crk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L3I90_09535
Transfer RNA biogenesis [BR:
crk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L3I90_09535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
UJS03375
LinkDB
All DBs
Position
complement(2139656..2141710)
Genome browser
AA seq
684 aa
AA seq
DB search
MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIISNGEGYKSTQ
IPRFLEQVEPYLDPSSLEVAWELLVAEGESVTPSQMANLLFSETLPYQCYAAHCLLSDDK
LFFKQKGEVYEPRSASQVAERKHQIEVETQKAQGQQEFLLRVERALKGDTVEWQKSDRQR
LDALEKYATLVADIIRMGVNSESLVRNYPPPGSVLETMNMLGRSATPPAALQLLVDLGWW
SPHENLFLRRSSIPIQFPSKILEVAQEILDSPPADLDVNRLDLKHLKVYTIDDESTTEID
DGLSCELLEDGRQRVWIHIADPTRWLIPEDELDLEARRRGSTVYLPTGMIPMFPEVLATG
PMSLIQGRLCCSLSFSVILDDSGGVAEYSIHPCLIKPTYRLTYEDVDEMLDLAVQAEPEI
QAIAGLAQKRKTWRNNQGAISITMPEAMIKVKNDEISIDILDESPSRQLVAEMMILAGEV
AARYAKSHNIPLPFRGQPQPELPPEEELLQLPPGFVRFCALRRCMPKSEMSTTPLRHAGL
GLDTYTQATSPIRRYSDLLTHFQLKAHLRGEEPPFSAEQIREVMMTVSNTTQELTMVERQ
TNRYYALEYLRRHLEQVWEVIVLMWLREDSNLALILFEDLGLQLPMMFKRSVKLGERVLV
KVALADPQKDIIQFQEIVYQDVVN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctggttgaatttagggttcaaggcgatcgccgactgggagtggta
gatcgtccagacggtaagactcgttggtttgtggtggatgaaaggggtcaatcccacagc
ctggcaccccgacaaataacctatatcattagtaacggagagggttataagtcaacacag
attcccaggtttttggagcaggttgaaccgtacttagatccatctagtctagaggtagcc
tgggaattgttggtagctgagggagaaagtgtcacccccagtcaaatggcaaatctactg
ttttctgagaccttaccataccagtgttatgccgcccattgcttactatcggatgacaaa
ctatttttcaagcaaaagggagaagtttatgaaccgcgtagtgcttcccaggtagcagaa
agaaaacaccagatagaagtagaaacccaaaaagctcaaggacaacaggaatttttactc
cgagtagaacgggcactcaaaggtgacacagtagaatggcaaaagtctgaccgtcaacgt
ttagatgccctggaaaaatatgctactttagtagccgatattatacgtatgggggtaaat
tcggaatctttggtgcgtaactatccacctccaggttccgtattagaaactatgaatatg
ctgggacgttctgcaactcccccagcagctttgcaattactggtcgacctagggtggtgg
agtccccatgaaaacctattcctgcgtcgttcctcaattcccattcagttccctagcaaa
atattagaagtggcgcaagaaattttggattccccaccagcggatttagatgttaaccgg
ttagacctcaagcatcttaaagtctacactattgatgatgaaagcactacagaaatagat
gatggtttaagttgtgaattgctggaggatggaagacaacgggtctggatacatattgct
gatcccacccggtggttaataccagaagacgagctagatctagaggccaggagacggggt
agtacggtttacctacccacaggaatgatccccatgtttccagaagtgttggccacaggt
cccatgagtctgatacagggaaggctttgttgttccctcagcttcagcgtaattctagat
gatagtggtggggttgcagagtatagtattcatccctgcttaattaaacctacctatcgc
ctgacctacgaagatgtagatgaaatgctagatttggcagtgcaagcagaaccagaaatt
caagcgatcgccggtttagcacagaaaaggaaaacctggaggaacaaccagggagcaatc
agtattactatgccagaagcgatgatcaaagtcaaaaatgatgagatcagcatagacata
ttggatgagtccccatctcgacaattagtggcggaaatgatgattttagcgggagaagta
gcagcacgttatgctaaaagccataatattcccctaccctttcgtggtcaaccccaaccg
gaactaccaccggaagaggaattactgcaactccctccagggtttgtgagattttgcgct
ctacgtcgatgtatgccaaaaagcgagatgagcacaacccccctacgtcatgcaggttta
ggactagacacttatactcaggctacttcccctattcgtcgttacagcgacttactcacc
cactttcaactcaaagcccatttaaggggtgaagaaccacctttttctgctgaacaaatc
agagaggtgatgatgactgtgagcaataccacccaagaattaaccatggtagaacggcaa
accaacagatactacgccttagaatacctacgtcgtcatctagaacaagtatgggaggtg
atagttttgatgtggttaagggaagatagtaatctggcattgattttatttgaggatcta
ggtttacaactaccaatgatgtttaagcgctctgtaaaattaggtgaaagggtattagtc
aaggtagctcttgcagacccgcaaaaagatatcatccagtttcaagaaatagtgtatcaa
gatgttgtaaattaa
DBGET
integrated database retrieval system
