Cylindrospermopsis raciborskii: L3I90_10230
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Entry
L3I90_10230 CDS
T08337
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3I90_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crk03021
]
L3I90_10230
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_10230
Enzymes [BR:
crk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3I90_10230
Transcription machinery [BR:
crk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3I90_10230
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3I90_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
UJS03500
LinkDB
All DBs
Position
complement(2343666..2345543)
Genome browser
AA seq
625 aa
AA seq
DB search
MRSVQSNQFDYVKIGIASPERIRAWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYVVLDPGNADTLVYKQLLTEDQWLEIEDRIYSEDSQ
LVGVEVGIGAEALLRLLSGINLEEEAEKLRGEIEAAKGQKRAKLIKRLRVIDNFIATGSQ
PEWMVMSAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLQIHQCGLPREMAIELFQPFVINRLIRSGIVNNIKAAKKLISRNDPTVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGRPIVTPSQDMVLGAYYLTAENPNATKGAGKYFASLDD
VIMAYQQDQVELHAYIYVRFDGDVQTGQPDNEPLEVTENEDGSRTLLYKFRRVREDAQGN
LISQYVYTTPGRVIYNKAIQDALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccgttcaatctaatcaatttgattacgttaaaattggcattgcttcaccagaa
cgtatccgcgcttggggggaacgtaccttacctaatggtcaggtggttggcgaggtgaca
aaacctgaaaccattaactaccgcaccctcaagccagaaatggatggtttattttgtgag
cggatctttggccctgctaaggattgggaatgtcactgtggtaaatataaacgggttcgt
catagaggtattgtctgtgagcgctgtggagtggaggtaacagaatcacgagttcgccgc
catagaatgggcttcattaagttagcagcacctgtagcccatgtttggtatctcaaaggc
attcctagttatattgccatactactagacatgcccctacgagatgttgagcaaatcgtc
tactttaactcctatgtagttttagatcctggtaatgctgacacactcgtttataaacaa
ctgttaacagaagaccaatggttagaaattgaggataggatttatagtgaagattctcaa
ttagtaggggtagaagtaggaattggtgcagaagctttactacgtttattatcaggtatt
aatttagaagaagaagcagaaaaactgcggggggaaattgaagcagcaaagggacaaaaa
cgggctaaattgattaaacgtctgcgggtaattgacaatttcattgccactggttcccaa
ccggaatggatggtgatgtcagccattccagtcattccacccgatctccgtcccatggta
caactagacggtggtagatttgctaccagcgatttaaacgacctctaccgtcgggtgatc
aatcgcaataatcgtttagctagactacaggaaatcctggccccggaaatcattgtccgc
aatgaaaaacgcatgttacaggaagcggtagatgctttaattgacaatggtcggagagga
cgcaccgtagtaggagccaataaccgtccattaaaatccctatcagatatcatagaaggt
aaacaggggcgatttcggcaaaacctcctgggtaaaagagtagactactcaggacgttcg
gttattgtagttggtcccaaattgcaaattcaccagtgtggactccccagggaaatggcc
atagaattgtttcagccatttgtgattaatcgtttaattcgatcgggaatagttaacaat
attaaagcagccaaaaaactcatttctcgtaacgaccctactgtttgggatgttttggaa
gaagtcatagaaggacatccggttatgctaaaccgtgcccctacgctgcatagactggga
attcaggcctttgaacccatattagtagaaggaagagcaatacagttacatcctcttgtt
tgtccggcattcaatgctgactttgatggagatcagatggctgttcacgttcccttatcc
ttagaaagccaagcggaagcaagactgttaatgttagcatccaacaacattctttcacct
gctacgggtagacccatcgtcacacccagccaagacatggttttgggagcctattacctc
actgctgaaaaccccaatgctaccaagggagcaggcaaatactttgcctccctagatgat
gtaatcatggcatatcaacaagatcaagtggaactacatgcctatatttatgttcgattc
gatggcgatgtgcaaacaggacaaccggataacgaacccttggaagttacagaaaacgaa
gatggtagccgtactctcttgtataaatttcgtcgagtacgagaagatgcccaagggaat
ttaatttcccaatatgtttatacaactcctggcagagtgatttataacaaagcaattcaa
gatgctttagccagctaa
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