Cylindrospermopsis raciborskii: L3I90_10680
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Entry
L3I90_10680 CDS
T08337
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3I90_10680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crk03019
]
L3I90_10680
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_10680
Enzymes [BR:
crk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3I90_10680
Messenger RNA biogenesis [BR:
crk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3I90_10680
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L3I90_10680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3208
Motif
Other DBs
NCBI-ProteinID:
UJS03585
LinkDB
All DBs
Position
2444470..2445900
Genome browser
AA seq
476 aa
AA seq
DB search
MKITSEEIRKNLKQIWGYENFRPPQEEIVNSLLSQKDALIIMPTGAGKSICFQLPALLNN
GLTLVVSPLIALIENQVEELKQRNQKADLLHSELPASQRYKVLKSITKQELRLLYLSPET
LLSSAVWEKISHPDIGITSLILDEAHCLVQWGETFRPVYRRLAAVRPALLNTKPPGTKIS
VAAFTATADHSTQNIIRDVLQLQQPDIYRLNPYRQNLQPTVKTVWTPKARKQQLLKFLQL
HPHQTGLIYVRTRKDSEELAQWLINLGYDTASYHGGLSGEERRAIEKSWLHGKKSFVVCT
CAFGMGINKADVRWIIHFHAPYLLSEYVQEIGRAGRDGMVAEVLTFISEPTGFFDGEDQR
RQQFFQQQILQQYKKAQELIKKLPLQGEVKSVVKEFQHGATALSLLHSSGKLLWNDPFHY
QILDKDIHQNRTQFNAAQQMVEFLKTKNCRWQFLLQSFGFNKGRENWRCGHCDNCR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataacatcagaagaaatacgtaaaaacctgaaacagatttggggttatgaaaat
tttcgtcctccgcaagaggaaatagtcaatagtttgctctcacagaaagatgctttaatt
attatgcctacgggggcgggaaaatctatttgtttccaacttccagccctcttaaacaat
ggtttaactctggtagtttcaccattaatcgcattaatagaaaatcaagttgaagagcta
aaacaaaggaatcaaaaggcagatctgctgcacagtgaattacctgctagtcaacgttat
aaggttttaaaatctattactaaacaagagttgagattattatacttatcaccagaaact
ctcctcagttctgctgtgtgggaaaaaatatcccatcccgacataggaattacatcctta
atattagatgaagcacattgtttggtgcaatggggagaaacatttagacctgtttatcgt
cgtttagccgccgtgcgtccagctttattaaacaccaaaccaccgggaacaaaaattagt
gtggcagcttttacagctaccgctgaccacagtacacaaaacattattagggatgttttg
caattacaacaacctgatatttatcgacttaatccctatcgtcaaaatttacaacctact
gtcaaaactgtctggacaccaaaagcaagaaaacagcaattattaaagttccttcaactc
catccccatcaaacaggattgatttatgttagaactcgcaaagacagtgaagaattggct
caatggttaatcaatcttggctatgatacagctagttaccatgggggtttaagtggggaa
gaaagacgagccatagaaaaaagttggttgcatggaaaaaaatcatttgttgtgtgtact
tgtgcttttggcatggggataaataaagctgatgttaggtggataatacattttcatgct
ccatatttattatcagaatatgttcaagaaattggacgtgcaggaagagatggaatggtc
gcagaagttttaacttttatcagtgaaccaaccggtttttttgatggagaagatcaaaga
agacaacagttttttcagcagcaaatattacaacaatacaaaaaagctcaagaattaatt
aaaaaattaccactacagggagaagttaagtctgtagttaaagaatttcaacatggcgcg
acagcactctccctactccatagcagtggaaaactactctggaatgacccttttcattat
caaattttggataaggatattcatcagaacagaacacagtttaacgctgctcaacaaatg
gttgaatttttaaaaactaaaaactgtcgttggcagtttttattacaatcctttggcttt
aacaaaggtagagaaaattggcgttgtggacactgtgataactgtagataa
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