Cylindrospermopsis raciborskii: L3I90_10815
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Entry
L3I90_10815 CDS
T08337
Name
(GenBank) RpoD/SigA family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
crk
Cylindrospermopsis raciborskii
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L3I90_10815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crk03021
]
L3I90_10815
Transcription machinery [BR:
crk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L3I90_10815
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF8825
PIN_4
Motif
Other DBs
NCBI-ProteinID:
UJS06352
LinkDB
All DBs
Position
complement(2470210..2471388)
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AA seq
392 aa
AA seq
DB search
MYQTKQLSRKEPMNLSELGRMEILDNAVEQEEPSLDNLDNLEAVVFEDSSILESLESDER
DGDEMGAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAAL
EEQLGHSVSKSEVASKFDLNEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF
LDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLN
KLKKAQRELKQKFARNPTEVEMAEFLEMTVQQLRQLQQLRRQALSLNHRVGKEEDTELMD
LLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMF
NLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaacaaagcaactatcccgaaaggaacccatgaatctttctgaattgggaaga
atggaaatactggataacgctgtggaacaggaagaaccatcactggataatctggataat
ttagaagcggtagtatttgaagactcctcaattttggagagtttggaatcagatgaacga
gatggggatgaaatgggtgcagctcgtccctcgggatataataagacagaacatgatgat
gctgtgggagccttttttaaggaaatggcccgttaccccctactcaaacccgatgaggaa
gtggagttagcacgtcgagtaagattcttagaagaagttaaggatttacaagctgcttta
gaagagcaactaggtcacagtgttagtaaaagtgaagtagcaagcaagtttgatctgaat
gaaaaacaattagaaagccgactgtatcagggaagagtggcaaagcggaaaatgattcgc
tctaatctgagattggtagtatctattgctaaacgatatttaaatcggggagtgcccttt
ctagacttaattcaagaaggagcaatggggctaaatcgtgccacagagaagtttgatccc
gataagggatataaattctccacttatgcttattggtggattaggcaagccattacacgg
gcaatagctaatgatgcaagaactattaggctaccaattcacattgtagaaaaactcaac
aagctgaaaaaagctcaaagagaactgaaacagaaatttgcgcgtaacccaacagaagta
gaaatggcggaatttttggaaatgactgttcaacaacttcgtcagttacaacaattgcgt
cgtcaagcactttctttaaaccatcgcgtgggtaaggaggaagatacggaattaatggac
ttattagaagatgaggacaaccaatctccagaagctaaaatgaatgaaaacatgatgcgt
caggagatatgggaagttttaggtgatgtacttacccctagggaaaaggacgtaatttcc
ctgcgttatggattaacaaccagtgaaccttgcaccctagaagaagtaggaaatatgttt
aatctttctcgcgagcgggtgcgtcaaattcaaagtaaagccatgcgaaaattgcgtcgt
cctcacattgctaaacgtttaaaaggttggctaatttga
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