Cylindrospermopsis raciborskii: L3I90_12785
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Entry
L3I90_12785 CDS
T08337
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3I90_12785 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crk03019
]
L3I90_12785 (recQ)
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_12785 (recQ)
Enzymes [BR:
crk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3I90_12785 (recQ)
Messenger RNA biogenesis [BR:
crk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3I90_12785 (recQ)
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L3I90_12785 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
GerE
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UJS03975
LinkDB
All DBs
Position
complement(2904399..2906561)
Genome browser
AA seq
720 aa
AA seq
DB search
MMQYPDLEKELKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPG
LTVVVSPLIALMQDQVEALRNNNISATLINSSLTTYQVRSREEAIMNGKVKLLYVAPERL
VSERFLPILDVVKEKFGLANFVIDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTA
TATDRVRADIIQQLGLKQPAVHIASFNRQNLYYEVRPKNRNSYGEILEIIKENEGSGIIY
CLTRKNVDELTLKLQNSQIAALPYHAGLVDHERAKNQTRFIRDDVRIMVATIAFGMGINK
PDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFGDVKTIEWSIGKKTDPQEQL
IAKQQLRQVIDYAEGTDCRRTIQLGYFGERFPGSCANCDNCRYPKPLQDWTVEAMKFLSC
VARCQEKYGMNYIIDVLRGTKNQKISLHKHDQLSTYGIGKDKTADEWKMLCRSLLHQGLL
EQTNDGYSVLKLNALSWEVMRKQRQVSIAAPVYQKADLVAVNTKALDIEALMNELRQLRK
QIADELGLAPYIIFQDSTLRLMAQIKPRTLEELGQISGVVSYKVNQYGERFLAVIQSYIQ
EQSWQPPKKSDDDLITNTESTTLELHQQGFTIEQIAQKRNMKTATIIRHLSDLIEKKQPV
DLNLLIPLDRQKKIWQVIDVLGDINLTPIRDYLGDSYTYNEIRLVRARWRRENRKNLSPK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagtatcccgatttagaaaaagaattaaaaaaatactttggttatgaccaattt
cgtcccggacaaagacaaattatagaagatgcactagaaaaccgtgatttaatggtagtt
atgcccacgggaggtggaaaatccctatgtttccaattaccagctcttttgaaaccaggt
ttaacagttgtagtatctcccctgatagcattaatgcaagatcaggtggaagcactaaga
aataataatatttctgccactcttattaatagcagtctcactacttatcaagttcgctct
cgggaagaagcgatcatgaatggtaaggtgaaattattatatgtagctccagaaagatta
gtgagcgagagatttttgcccattttagatgttgttaaagaaaaatttggcctggctaac
tttgttattgatgaagcccattgtgtttctgagtggggtcatgattttcgtccagaatat
agacaattaatcttgttgaggaagcgattttctcatgttcccaccatagctctaaccgca
actgctaccgatagagtgagagctgatatcatccaacagttgggattgaaacaaccagcg
gttcacattgctagttttaaccgacagaacctgtactatgaagtgcggcctaaaaataga
aattcctatggggaaatattagaaattattaaagaaaatgagggttcgggaattatttac
tgtctaacccgtaagaacgtagatgaactaaccttaaaactacagaatagtcaaattgct
gctttaccctatcatgcaggtttagttgatcacgaaagagccaaaaaccaaactcgattt
atccgtgatgatgtgcgaattatggtggcaactattgcctttggcatgggtattaataaa
cctgatgtacggtttgtcattcactgtgacttgcccagaaatttagaaagttattatcag
gagtcaggtcgcgctggaagagacggggaaccctctcgatgcaccttattttttagtttt
ggtgatgtgaaaaccattgaatggagtataggtaagaaaaccgatccccaagaacagctg
attgctaaacagcagttaagacaagtgatagattatgctgaaggaacggactgtagacgc
acaattcaattggggtattttggggaaagatttcctggtagttgtgctaattgtgataat
tgccgttatcccaaacccttgcaagattggactgtggaagcaatgaagtttttatcttgt
gtagcacgatgtcaggaaaaatatggtatgaattatattattgatgtgttaagagggacg
aaaaatcaaaaaatttctttgcataaacatgatcaactttctacctatggtatcgggaaa
gataaaacagcagatgaatggaaaatgttatgcagatctttgttgcaccaagggttattg
gaacaaactaatgatggctattcggtgttaaaattaaatgctttaagttgggaggtgatg
cgaaaacaacgacaagtttcaattgctgctcccgtatatcaaaaggctgatttggtcgct
gttaatactaaggctttagatatagaagctctgatgaatgaactcagacagctacgaaaa
caaattgctgacgaactgggtttagctccctatattatttttcaagattcgaccttacga
ctaatggcccaaatcaaacccagaactctagaagagttaggacaaatttctggggtggtt
agttataaggtcaaccaatatggagaaaggtttttggcagttattcaatcctatattcaa
gaacaaagttggcaaccaccaaaaaagagtgatgatgatctaataactaatacagaatca
actaccttggaattgcaccagcaaggattcactattgaacaaattgcccaaaaacggaat
atgaaaactgccaccattattcgtcatctgtcagacctgatagaaaaaaaacaacctgtt
gatttgaatttgttaatacctttggatagacaaaagaaaatttggcaggtcatagatgtt
ttgggtgacattaatttaacccccattcgagattatttgggtgatagttatacctataat
gagattcgcttagtcagagctagatggcgaagggaaaatcgtaaaaatctatcccctaaa
tag
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