Cylindrospermopsis raciborskii: L3I90_15965
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Entry
L3I90_15965 CDS
T08337
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3I90_15965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crk03019
]
L3I90_15965
03009 Ribosome biogenesis [BR:
crk03009
]
L3I90_15965
Enzymes [BR:
crk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3I90_15965
Messenger RNA biogenesis [BR:
crk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3I90_15965
Ribosome biogenesis [BR:
crk03009
]
Prokaryotic type
rRNA helicases
L3I90_15965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UJS04541
LinkDB
All DBs
Position
complement(3620702..3622195)
Genome browser
AA seq
497 aa
AA seq
DB search
MSSITFQELGISPERATHLENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSL
PMLERLDPNKRAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK
RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQDRQT
ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEM
EDPETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVAT
DIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFER
HNRQNWQVLSIPTRAQIEAKHIQKLKEQVSEALAGERLASFLPIISELTEKYDAQAIAAA
ALQLAYDQTRPAWLQNGVDIPVEEPTPKPKINKRRESSDGNGAGRSRSWSKSDYGDDSRP
TPKPKLRRREPSVSPSN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtattacctttcaagaactaggcatttccccagaacgtgcgacccacttagaa
aacatggggtttaccacaccgaccaacatccagacccaagctattccccaattattggcg
ggaagggacgtagtaggtcagtctcagactggtacaggtaaaacagcggctttttccttg
cctatgttagagagactagatcctaacaagagagcagtacaggctttagtgttaactccc
actcgtgaattagcaatgcaagttcatgatgccatttcccagtttatgggtgatagtgag
ctgcgagtattagccatttatggtggtcaatccattgaccgacaaatgatccaattaaaa
cggggcgtacatgtagtagtggggactccaggaagggtaattgacctcttggaacgcggt
agtttaaaacttgaccaagtgaaatggtttgttttagacgaagcggacgaaatgttaagc
atgggatttattgatgatgtgatcaaaattctctcccaagcaccccaggatcgtcaaact
gcgcttttttcagctaccatgcccccctctattcgccaattggtgaataagtttctcaat
tctcccgtcacagtaacagtggagcaacccaaagctacaccgactaaaattaatcaagta
gcctatttaataccgagacactggactaaagctaaggccctacaaccaattctggagatg
gaagatccggaaacagccttgattttcgtccgtactcgtcgtactgctgcggagctgaca
aatcaattgcagtccgctggtcacagtgtagatgaataccacggagatttatctcaacaa
gctagggaaagattattaacccggttccgcaatcgtcaagtacgatgggtagtagcaaca
gatattgctgcgcgggggttagatgttgatctactttcccacgtgattaacttcgaccta
ccggatagcgtagaaacctatgttcaccggattgggagaacgggacgtgctggtaaagaa
ggaacagcaatatcactggttcaaccctttgaaagaagaaagcaacaggcttttgaacgt
cataatcgccaaaactggcaagtattgtcaattcctaccagagcccaaattgaggctaaa
catattcagaagttgaaagagcaggtttcggaagctctcgctggcgaaagattagcctcc
ttccttcctatcattagtgaattgacggaaaaatatgatgcccaagctattgcagcggca
gctttacaattggcttatgaccaaacccgtcctgcttggttacaaaatggagtagatatt
cccgtggaagagcctacacccaagccaaaaatcaataaacgacgtgagagtagtgatggt
aatggagcaggtcgtagtcgttcttggtctaaatctgactatggtgatgacagcagaccc
acacccaaacccaaattgagacgtcgggaaccatcggttagtcccagcaattag
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