Corynebacterium renale: NCTC7448_01208
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Entry
NCTC7448_01208 CDS
T06893
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crl
Corynebacterium renale
Brite
KEGG Orthology (KO) [BR:
crl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crl03016
]
NCTC7448_01208 (rtcB)
Enzymes [BR:
crl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC7448_01208 (rtcB)
Transfer RNA biogenesis [BR:
crl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC7448_01208 (rtcB)
Prokaryotic type
tRNA splicing ligases
NCTC7448_01208 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SQI23648
LinkDB
All DBs
Position
1:1260719..1261867
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AA seq
382 aa
AA seq
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MADIKNFASHLEPEVLEQVGQLATLDFIYPHVALMPDAHFGMGSSVGTVFGTKGAVIPAA
VGVDIGCGMIGVRTRFTATDLEGRDLVELRDRLEADIPLSPGNYNSWNLTESAEQRCREL
DAQARRDGVDLRHSKNWRQQLGSLGGGNHFIELCLDEEDRVWMFLHSGSRGVGNKIAQRH
IKIAQRLTADRVPHKDLAYLEEGTPEFDAYLADLHWAQRFAWLNREEMMDRFARALGDFV
GRPVEEEQRINCHHNYTVREEHYGEQVWLTRKGAVLADAGVPALIPGSMGTSSYVVEGLG
NPKGLHSAPHGAGRRMSRRKAREAFTAEDLAARMEGIVYRPGEAWIDEIPDAYKDIDQVM
EDARGLVRVTHTLRQVLNVKGT
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacattaaaaactttgcatcacatctggaaccagaggtcctcgagcaggttggc
caactggcaacactggacttcatctacccgcacgtggcactcatgccggacgcccacttc
gggatgggctcctcggtgggcaccgtattcgggacgaaaggtgctgtgatccccgccgcg
gtcggggtggatataggctgcgggatgatcggggtgagaaccagattcacggccaccgat
ttggaaggccgtgatctggttgagctccgcgaccgcctggaagcagatattcccctttcc
ccggggaactacaactcctggaatctcacagaatccgctgaacagcggtgccgagagctt
gacgcgcaggcccgccgcgatggggtagatctgcggcactcgaagaattggcgccagcag
ttgggttcgcttggcggcggtaaccacttcatcgaactatgcctcgatgaggaggaccgc
gtctggatgttcctgcactccggttctcggggcgtgggcaacaaaattgcgcagcggcac
atcaaaattgcccagcgcctgaccgcagaccgcgtgccccacaaggacttggcgtacctg
gaggagggtaccccggaattcgacgcttacctggccgacctgcactgggcgcagcgtttt
gcgtggctcaacagggaagagatgatggaccgtttcgcccgggctctcggagattttgtg
ggccgccccgtggaggaggagcagcgtatcaactgccaccacaactacacggtgcgggag
gaacactatggtgaacaggtgtggttgacccgcaagggcgctgttctggccgacgctggc
gtccccgcgctcattccgggctcaatgggcacgtcttcctacgttgtcgaagggctgggc
aatccgaaggggcttcattctgcacctcacggtgcgggccggaggatgagtcgtcgcaaa
gcgcgcgaagcgttcaccgctgaggacctcgccgcgcgcatggaaggcatcgtgtaccgg
ccgggcgaagcgtggatcgacgagattcccgacgcatacaaggacatcgaccaggtcatg
gaggatgcccgcgggctggtgcgcgtcacgcacaccttgcggcaggtgctcaacgtcaag
ggaacgtaa
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