Corynebacterium renale: NCTC7448_01220
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Entry
NCTC7448_01220 CDS
T06893
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crl
Corynebacterium renale
Pathway
crl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC7448_01220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crl03021
]
NCTC7448_01220 (rpoC)
03400 DNA repair and recombination proteins [BR:
crl03400
]
NCTC7448_01220 (rpoC)
Enzymes [BR:
crl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC7448_01220 (rpoC)
Transcription machinery [BR:
crl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC7448_01220 (rpoC)
DNA repair and recombination proteins [BR:
crl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC7448_01220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
F_bP_aldolase
Motif
Other DBs
NCBI-ProteinID:
SQI23661
LinkDB
All DBs
Position
1:1276226..1280227
Genome browser
AA seq
1333 aa
AA seq
DB search
MFDVNLFDELRIGLATAEDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
QCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAAYIITSVDEEARHDDQSTLEAEMLLEKKEVQQDAEVEINERAQKLEED
LAALEAEGAAADARRKVQRAAEKEMQHIRERAEREVDRLEEIWQTFIKLAPKQMIIDETI
YDELIDRYEDYFEGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQRKLRALKRLKVVA
AFQRSGNDPAGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVSGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVEHDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMAKGEDEFGGQ
GAYSEATDEHPATGVYSSMAEAIMARDRGVLGLQAPIHVRISHLRPPADIEAEQFPDGWE
KGQTWMAHTTLGRVMFNELLPWDYPYLEGVMARKGGGDTIMLGDVINDLAAKYPMITVAQ
TMDKMKDAGFYWATRSGVTIAMSDVLVLPNKEEILERYEADARQIERKYWQQGALTERER
YDRLVELWKTATDEVGEAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRGE
YITRPINTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREED
CGTRQGIRVPVAEAIQDAAGNVTGYRGHELIETSVAGRVLAADAKDSEGNVVLEGGSDLT
DAAIQKLIDAGIEQIKVRSVMTCQTPTGVCAKCYGKSMASGHQVDIGEAVGIVAAQSIGE
PGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVAGTIHLEEEGNFYTLT
ITPDDGSDNVVYEKLSRRQGLAQVRRPMESNPQAMIERSLRDGDHVEVGDRLLRGAADPH
DVLEVLGRRGVEQHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIESGSTDFLPGT
LVDLSEAKAANAEAIAAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAIN
KRSDKLIGLKENVIIGKLIPAGTGISRYRNITVTPTEAARTAAYSIPTYTDSIYGDDFGE
YTGASVPLDELGL
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagcttcgcattggcctggctaccgctgaagacatc
cgccgttggtcaaagggcgaggtcaagaagccggagacaatcaactaccgtaccctcaag
cctgagaaggacggcctgttctgcgagcgcattttcggccctacccgcgactgggagtgc
cagtgcggcaagtacaagcgcgtccgctacaagggcatcatctgtgaacgctgtggcgtc
gaggtgaccaagtccaaggtgcgtcgtgagcgcatgggccatatcgagctcgccgcacca
gtgacccacatctggtacttcaagggtgttccatcccgcctgggttacctgcttgacctg
gcgccaaaagacctggagcgcatcatctacttcgcggcgtacatcatcacgtccgtcgac
gaagaagcacgccacgacgaccagtcgactctggaagcagaaatgctcctggagaagaag
gaagtccagcaggacgcagaagttgagatcaacgagcgcgcccagaagctggaagaagac
ctcgcagccctcgaggctgaaggcgcagcagctgatgctcgtcgcaaggtccagcgtgcc
gctgaaaaggaaatgcagcacatccgcgagcgcgctgagcgtgaagtcgaccgcctcgag
gaaatctggcagaccttcattaagcttgctccaaagcagatgatcatcgatgagaccatc
tacgacgagctcatcgaccgctacgaggactacttcgagggcggcatgggtgcagaagcc
atccagaccctcatccgcaacttcgacctcgacgctgaggctgaagaactccgcgagatc
atcaacaacggcaagggccagcgcaagctgcgcgccctgaagcgcctgaaggttgttgcc
gcgttccagcgttccggcaacgacccagccggtatggtcctggacgcgatcccggttatc
ccgccagagctgcgccccatggtccagctcgacggtggccgcttcgcgacctccgacctg
aatgacctgtaccgccgcgtcatcaaccgcaacaatcgtctgaagcgcatgatcgaactg
ggcgcaccagagatcatcgtgaacaacgagaagcgcatgctgcaggaatctgtggacgcg
ctgttcgacaacggccgtcgtggtcgtccggtttctggtccgggcaaccgtccgctgaag
tccctgtctgatctgcttaagggtaagcagggtcgcttccgccagaacttgctgggtaag
cgtgttgactactctggccgttcggttattatcgtcggcccgcagctcaagctgcacgag
tgtggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtcatgaagcgtctg
gtggagcacgattacgcacagaacatcaagagcgcaaagcgcatggtggaacgccagcgt
ccagaggtgtgggacgtcctcgaagaggctatttccgagcaccctgtgatgctgaaccgt
gcacctacgctgcaccgcctgggtattcaggcgttcgaaccgaagctggtcgagggcaag
gctatccagctgcacccactggcctgtgaggcgttcaacgctgacttcgacggcgaccag
atggcagtccacctgccgctgtccgccgaggctcaggctgaggcccgcatcctgatgctg
gcatcgaacaacattctttccccagcatccggtaagccactggctatgccacgtctggac
atggtcaccggtctttactacctgaccatggctaagggtgaggacgagttcggcggccag
ggcgcatactccgaggcaaccgacgagcacccagcaaccggtgtgtacagctccatggct
gaggccatcatggcccgcgaccgtggcgttctgggcctacaggctccgatccacgtgcgc
atcagccacctgcgcccgccagctgacatcgaggctgagcagttccccgacggttgggaa
aagggccagacctggatggcgcacaccaccttggggcgcgtcatgttcaacgagctgctt
ccatgggactacccataccttgagggcgttatggcccgtaagggtggcggtgacaccatc
atgcttggcgacgtcatcaacgacctcgcagccaagtacccgatgatcaccgttgcgcag
acgatggacaagatgaaggatgccggcttctactgggctacgcgttccggtgtgaccatc
gcaatgtctgacgttctggttcttccaaacaaggaagaaatcttggagcgctacgaggca
gatgctcgccagattgagcgtaagtactggcagcagggtgcgctgaccgagcgtgagcgt
tacgaccgtctcgtggagctgtggaagaccgcgaccgacgaggttggcgaggccgtcgag
aagctgtacccagacgacaacccaattccgatgatcgtgaagtccggtgctgccggtaac
atgcgtcagatttggaccctggccggtatgaagggcatggtcgtgaactcgcgtggtgaa
tacatcacccgtccgatcaacacctccttccgcgaaggcctctcggttctggagtacttc
aacaactcgcacggttcccgtaagggtctggccgataccgcactgcgtacggctgactcc
ggttacctgacccgtcgtcttgttgacgtcgcgcaggacgtcatcgtccgcgaagaagac
tgtggtacccgtcagggcatccgcgtcccagttgcggaagcaattcaggatgctgcgggc
aacgtcaccggctaccgtggtcacgagctcatcgagacctctgtggcaggccgtgttctc
gcagccgatgccaaggactccgagggcaatgttgtcctcgagggtggttccgacctcacc
gatgctgcgatccagaagctcatcgatgccggtatcgagcagatcaaggtccgctccgtg
atgacctgccagaccccaaccggcgtctgcgctaagtgctacggcaagtccatggcctcc
ggccaccaggttgacatcggagaggctgtcggcatcgtcgctgcacagtcgattggtgag
cctggtacccagctgaccatgcgtacgttccaccagggtggtgtcggtggcgacattacc
ggtggtctgccacgtgtccaggagctgttcgaggcccgcgttcccaagaactgcgccccg
attgcttccgtcgcaggtacgatccacctggaagaagaaggcaacttctacacgttgacg
attacgcctgacgacggctccgacaacgtggtctacgagaaactgtcgcgccgccagggc
ctggcccaggtccgtcgcccgatggaatccaacccgcaggccatgatcgagcgttcgctg
cgcgacggcgaccacgtcgaggtgggcgaccgcctgctgcgtggcgctgccgatccgcac
gacgtactcgaggtcctcggccgtcgtggtgtggaacagcacctcatcgacgaggttcag
gctgtgtaccgtacccagggtgtggccatccacgacaagcacatcgagatcatcatccgt
cagatgctgcgtcgcggtaccgtcatcgagtccggttccacggacttcctgccaggtacc
ctcgtagatctctccgaggcgaaggctgcgaacgcggaagcaatcgcagctggtggccag
ccggcagagctgcgtagtgagatcatgggtatcacgaaggcctccttggcaaccgagtcc
tggctgtcggccgcatcgttccaggagaccacccgcgtgctcaccgacgctgcgattaac
aagcgttcggacaagctgatcggtctcaaggagaacgtgatcatcggtaagctgatcccg
gccggtaccggtatctcgcgctaccgcaacatcacggtcaccccgaccgaagcggcacgc
accgccgcgtactccatcccgacgtacaccgactccatttacggtgacgacttcggcgag
tacaccggcgcatccgtcccactggacgagctcggcctctaa
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