Corynebacterium renale: NCTC7448_01673
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Entry
NCTC7448_01673 CDS
T06893
Symbol
deaD1
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
crl
Corynebacterium renale
Pathway
crl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC7448_01673 (deaD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crl03019
]
NCTC7448_01673 (deaD1)
03009 Ribosome biogenesis [BR:
crl03009
]
NCTC7448_01673 (deaD1)
Enzymes [BR:
crl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC7448_01673 (deaD1)
Messenger RNA biogenesis [BR:
crl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC7448_01673 (deaD1)
Ribosome biogenesis [BR:
crl03009
]
Prokaryotic type
rRNA helicases
NCTC7448_01673 (deaD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
SQI25528
LinkDB
All DBs
Position
1:1742628..1744655
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AA seq
675 aa
AA seq
DB search
MSITDIATGGENEPEKQDMSETQDQSQVDADVTRDASTSEATDSESKTESNGFESLGLPS
EVLAAVHKVGFETPSPIQAETIPLLMEGNDVVGLAQTGTGKTAAFALPILARIDHSIRAP
QALVLAPTRELALQVADSFQSFADHLGDIRVLPIYGGQAYGIQLSGLRRGAQIVVGTPGR
VIDHLEKGSLDISGLRFMVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPNGIR
KISKQYLNNPSEVTVKAETRTNTNITQRWLHVAHRNKLDALTRILEVTEFEAMIVFVRTR
NETEEVAEKLRARGFSAAAINGDINQAQRERTVDQLKDGRLDILVATDVAARGLDVERIS
HVLNYDIPNDTEAYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNATLTEMDLPT
VDEVNESRKARFADSITESLEDSQVEIFRTLVKEYSEANDVPLEDIAAALATQAQAGDEF
LMKEPPKDRRDRRDRDRFERDDRRDRDRGPRRDRDFDRGGRSRFEAEPGKTMYRLAVGKR
QHVRPGAIVGALANEGGLNSRDFGRISIFADHSLIELPNDMDPQVFDRLADTRISGQLIH
LEKDTGRPPRRDRDDRGGRGGYRGGRDRDRGGYRGGRDRDDRGGRGGYRGGRDRDRGGYR
GGRDRDDRGGRQWRD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatatcgcaaccggcggcgagaacgagccggagaagcaagatatgtcg
gaaactcaggatcaatcgcaggtcgacgccgacgtcaccagggatgcgagtacttctgag
gccaccgactccgaatccaagacagaaagcaatggtttcgaaagcctcggacttccatct
gaagtgctagcagccgtccataaggtcggatttgaaaccccatcgcctatccaggcggaa
actattccgctgttgatggaaggcaacgacgttgtaggtctcgcgcaaacaggcacgggc
aagaccgcagcttttgcgctgccaattctggcgcgcatcgaccattccatccgtgcgccc
caggcactggtgctggctccgacccgtgagcttgcgcttcaggtggcggactccttccag
agtttcgctgaccacttgggtgacatccgtgtgctgcccatttacggtggccaggcctat
ggcatccagttgtccggcctgcgccgtggcgctcagattgtcgtgggtacccctggtcgc
gttattgaccacctagaaaagggttcgctggatatttccggcctccggttcatggtcctt
gacgaagccgacgagatgctgaacatgggcttccaggaagacgtggaacgcatcctggag
gatactccggaagagaagcaggtcgcgctgttttcggcaaccatgccgaacgggatccgc
aagatttctaagcagtaccttaacaatccgtctgaggtaaccgtcaaggcggaaactcgt
accaacacaaacattacccagcggtggctgcatgtcgcgcatcgcaacaagctcgacgcc
ctgacccgcatccttgaggtcactgagtttgaggcgatgatcgtcttcgtccgtacccgt
aacgaaaccgaggaagtcgcagaaaagctgcgtgcacgcggtttctctgcagcggcgatt
aacggcgacatcaaccaggcacagcgcgagcgcacagtcgatcagctcaaggatggccgt
ttggacatcctggttgctaccgacgttgccgcccgcggtctggacgtggaacgtatcagc
catgtgctgaactacgacatccccaatgacacggaggcgtacgtccaccgaatcggccgt
accggtcgtgcaggccgctccggtgaagcaatcctcttcgttactccgcgtgaacgccgc
atgctgcgttccatcgagcgtgcgaccaacgcaacgcttacggagatggacctgccaaca
gttgatgaggtcaacgagtcccgtaaggcgcgtttcgctgattccattactgagtctctc
gaagactcacaggtggaaatcttccgtacgctggtcaaagaatattccgaggccaacgac
gttccactggaagacattgctgctgcactggcaacccaggcgcaggctggcgatgaattc
ctgatgaaggaaccgccaaaggatcgccgtgatcgccgcgaccgtgaccgtttcgaacgc
gatgaccgtcgtgatcgcgatcgtggcccccgccgcgaccgtgactttgatcgtggtggg
cgctctcgtttcgaagcagaaccgggcaaaacgatgtaccgcctggctgttggcaagcgt
caacacgtgcgtccgggtgccatcgtcggcgccctggcaaatgaaggtggcctgaactcg
cgtgacttcgggcgtatctcgatttttgctgatcactcgctgattgagctgccgaatgat
atggacccgcaggtttttgatcgtctggcggatacccgcatttcgggtcagttgatccac
ttggagaaagacacgggacgccctccgcgtcgtgaccgcgatgaccgtggtggacgtggt
ggctacagaggtggacgcgaccgtgatcgtggtggctaccgtggtggtcgtgaccgcgat
gatcgtggcggacgtggtggctacaggggcggacgcgaccgtgatcgtggtggctaccgt
ggtggtcgtgaccgcgatgatcgtggcggacgtcagtggcgcgattaa
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