Corynebacterium renale: NCTC7448_02077
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Entry
NCTC7448_02077 CDS
T06893
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
crl
Corynebacterium renale
Brite
KEGG Orthology (KO) [BR:
crl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crl03019
]
NCTC7448_02077
Enzymes [BR:
crl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC7448_02077
Messenger RNA biogenesis [BR:
crl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC7448_02077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
TsaE
T2SSE
NACHT
HA2_N
ABC_tran
ResIII
AAA_23
Motif
Other DBs
NCBI-ProteinID:
SQI26216
LinkDB
All DBs
Position
1:2165583..2169506
Genome browser
AA seq
1307 aa
AA seq
DB search
MTSPHNSDSVSTPQRSELYAALDEVRLRDRPVFRRRLKKARSPHALQAIGSDITEAQRRV
QNVDKHIPELTFPENLPVTAFHDDLAQAISENQVVIIAGETGSGKTTQIPKICLELGLGR
KGLIGHTQPRRLAARTVAERIADELGQDIGESVGYAIRFDDKVSDTTAVKLMTDGILLSE
MQRDRKLLAYDTLIIDEAHERSLNIDFLLGYIKRLLPQRPDLKVIITSATIDPERFADHF
AAADGTPAPIIEVSGRTFPVEIRYRPLEIVEGDRVRDIDPIEGLLAALEELMAEGPGDIL
CFFAGERDIRDAMDAIEGKHWRGVEVTPLFGRLSNQEQHRVFSPHKGRRIVLATNIAETS
LTVPGIRYVVDTGLARISRYSTRTKVQRLPIEPISQASAQQRSGRCGRVADGIAIRLYSE
EDFQSRPEFTDPEILRTNLASVILQMAALRLGDIREFPFIQPPEHRAIRDGVALLHEIGA
ITQEEREGQPVLTAIGKVIARIPVDPRMARMVVEGHLKGVLDAVIVIVAGLTIQDIRERP
LEFQAQADQLHARFKDDSSDFISYLKLWDYIHEQRAQLSGNAFRKKLKAEYLHHMRSREW
RDLVRQLRDVVSDLGWKETTHTDSARDRDLIHQSLLSGLLMHIGVREGQTREYHGTRNTR
FMIFPGSSLSRKRPDFIMAAEIVETSQLWARDVAAVDPTWVEKLGAHLLKRTHSEPFWSR
KRGAAMVHEKVLLFGVPLVADREVPYHRVDPEAARDMFIRHALIDGDWNFNHRFLQDNAR
KLDTAAEIEDKARRRGLVVDEDALFDFYDAKLPSTSTNAASFNKWWKRKKQKNSHYLDFD
PDQLRTDQAGQYTEEQFPDTWRSRESDVVFELSYMFDPGSPRDGVTVHIPVPMLAGIDTE
QFTWLVPGMREELCVELIRTLPKVQRRTVVPAPDFARRALPNLDPTQGTVAEGLAASLQT
LGVTGIGAEDFQPEKLPDHLKMTYAAIDKRGKIIDSDKNLAALQKRQTGHIRSSVSKLSR
KQESIVAQEWTSETFGALDETVTTKVDGHDVTAYPALVATEDGFAVKVLPTKQDADAAMI
TATLTMLLREVTINTKQMVKGLPLTQRVAVDNYPHGGAEGLVNEARVASVRDALVEAGGA
VRSPEAFADLKQTIIPTIPARVRAMVVAVAPALADYERLAEELKQWDGEAITDMKKQLEF
LLPPQALVIHGQGRLRHLGRYVKAMVLRLDDINRDPDRDADRQEVVNSLEQQLEAKVKKL
APGAAKTTRVKDIQWDLQELRVSLFAQRLGTAKTISPRRIEKAIAKL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccctcataattcggattctgtttccaccccgcaacgctcagagctctacgct
gcgctcgatgaagtacgcctacgcgaccgcccggtttttcggcgccgcctcaagaaagca
cggtcgccacacgcgctccaagccattggttctgatatcaccgaggcgcagcgcagggta
cagaacgtcgataagcacattcctgagctgacttttccagaaaacctcccggttacagcg
tttcacgacgacctggcccaggcgatttctgaaaaccaggtagttatcatcgccggtgag
accggatccggcaagaccacgcaaattccaaagatctgcctcgaacttggtttagggcgc
aagggactgattgggcatacgcaaccacgacgtttggcagcacggaccgtcgcagagcgg
attgccgacgagcttggtcaagacattggcgaatctgtaggttacgcgattcgcttcgac
gataaagtttccgatacaaccgcggtcaagctgatgaccgacggcatattgctgtctgaa
atgcagcgtgaccggaaactcttggcctatgacacgctgatcatcgacgaagctcatgaa
cgctcactgaatatcgatttcctgcttggttatatcaagaggctgctcccccagcgtccg
gatttgaaagtgatcatcacctccgcgacgattgaccctgaaagattcgccgaccatttt
gccgctgccgacggcactccggctcctatcatcgaagtctcggggcgtactttcccagtg
gaaatccggtatcgaccgcttgaaatcgtggagggcgaccgcgtccgcgacatcgaccca
atcgaaggtttactggcggcgcttgaagaactcatggccgaaggccccggagatatattg
tgtttcttcgccggcgagcgtgatattcgtgatgccatggacgccatcgagggtaaacat
tggcgtggcgtcgaagtcacaccactctttggccggctctctaaccaagagcagcatcga
gtttttagtccgcataaaggtcgtcgcattgttctggcaacaaatattgcagaaacatcc
ctgacggttccaggtatcaggtacgtcgttgatactggtctcgcccgcatctcaaggtac
tcaacccggaccaaagtacaacgtctccccatcgaaccgatttcgcaagcgagcgcgcaa
cagcgttcgggtcggtgcggtcgcgtggcggacggtatcgccattcgcttgtactccgaa
gaagacttccaatcacgaccggagttcaccgacccagaaattttacgcacgaatcttgct
agcgtcattttgcaaatggccgcactgcgcttgggagacatccgcgaattcccgtttatt
cagccgccagagcaccgcgctattcgcgacggagtcgcgttacttcacgaaatcggtgca
attacgcaggaagaacgcgaaggacaaccggttctcaccgcaatcggtaaagttattgcg
cgtatcccagttgacccgcgtatggcacgcatggttgtagagggccatctcaaaggtgta
cttgatgcagtcatcgtgattgtcgctggactcaccattcaggacattcgcgaacgaccc
cttgagttccaggcccaggctgatcagcttcatgcgcggtttaaggatgacagcagcgat
ttcattagctatctcaaattgtgggactacatccatgagcagcgggcgcagctcagtgga
aacgcattccgtaagaagctgaaagcggagtatctgcaccacatgcggtcgcgggaatgg
cgcgatttggttcgccagcttcgcgacgttgtatctgacctcggatggaaagaaactacc
cacacagactcagcccgcgaccgggaccttatccaccagtcgctgctatccggactgctc
atgcatattggtgttcgtgaagggcagacccgcgaataccacggaacgcgcaacacgcga
ttcatgattttcccaggctcttcactttcacgtaaacgtccagatttcatcatggcagca
gaaatcgtcgaaacgtcgcagctatgggctcgagatgttgccgcagtcgatcccacatgg
gtggaaaaactaggcgcgcatctactcaagcggacgcattctgagccgttctggtcccgc
aaaaggggtgccgcaatggttcacgagaaagttttacttttcggagtccctctcgtggca
gatcgagaggtcccctatcaccgcgttgaccccgaagcagcacgtgacatgttcattcgt
catgcgcttatcgacggtgactggaacttcaatcaccggttcctccaagataacgcgcgc
aaattggacaccgcggctgaaatcgaggacaaggcccgtcgacggggtctcgttgtagac
gaagacgccttattcgacttctatgatgctaaactaccgtccacctctactaacgcagca
agtttcaacaagtggtggaaacgaaagaaacaaaagaactctcattacttagactttgac
ccagatcagcttcgcactgatcaagcggggcaatacaccgaggagcaattcccagacaca
tggcgatcgcgtgagtcagacgtagtatttgaactctcctatatgtttgatccaggcagc
ccccgagatggtgtcacggtacatattccagtcccgatgcttgccggcatagacaccgaa
caatttacctggctcgtcccaggtatgagggaagaattatgtgtggaacttattcgtacg
ttaccgaaggtacagcgacgcacagtcgtcccggctcctgacttcgcgcgtagagcacta
cctaacttagatccgacacaaggaactgttgcggaaggtttggccgcttcgttacaaacg
ctcggtgttaccggcataggagctgaagatttccaaccggaaaaactccccgaccactta
aaaatgacctatgctgcaatagacaaacgtggcaagattatagatagcgacaaaaattta
gctgctcttcaaaaacgccaaactggtcacatccgctcttctgtatcgaaactatcccgt
aagcaagaatctatcgttgctcaagaatggacgtctgagacgttcggggcactagacgaa
acggtcacgaccaaggtcgatggtcacgatgtgacggcgtaccctgctttggtggccact
gaggatggttttgcagtcaaggttctcccgaccaagcaagacgcagatgctgcgatgatc
acggcgacgctgacaatgctgctccgcgaggtcacaatcaacactaaacagatggttaag
ggcctgcccctaacgcagcgagtggcggtggataactatcctcatggcggtgctgagggc
ctagttaacgaggcccgcgttgcatcagtacgggacgcgcttgttgaagctggtggtgcc
gtccgatctccggaggcattcgcggatctcaagcagacaatcatcccgactatcccagca
cgagtccgtgcgatggtagtggccgttgctcccgcattggctgactatgaacgactagca
gaagaacttaagcagtgggacggcgaagccattaccgacatgaagaaacagcttgagttt
ttattgccgccacaggccttagtaatccatggacaaggtcgcttacgacatttggggcga
tatgtaaaagctatggtgttgcgcttggacgatatcaatcgcgaccccgaccgagatgcg
gatcgccaagaagttgtgaattctctcgagcaacaattagaggccaaggtgaaaaagtta
gcgccaggagctgcgaagactacgcgtgtgaaagatatccagtgggacctccaagaacta
cgcgtgagccttttcgcgcagcgtttgggaaccgccaagacaatctcgcctcgccgtatc
gaaaaggctatcgccaagctttag
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