Paracrocinitomix mangrovi: K6119_09365
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Entry
K6119_09365 CDS
T07876
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crm
Paracrocinitomix mangrovi
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crm03016
]
K6119_09365
Enzymes [BR:
crm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K6119_09365
Transfer RNA biogenesis [BR:
crm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K6119_09365
Prokaryotic type
tRNA splicing ligases
K6119_09365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
2OG-Fe_Oxy_2
Motif
Other DBs
NCBI-ProteinID:
UKN03698
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All DBs
Position
2059384..2060544
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AA seq
386 aa
AA seq
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MKNVVSTERLPIKMWLSDLEEEALNQAKNLANLPFAFKHIPLMPDSHTGYGMPIGSILAT
KGVVVPNAVGVDIGCGMCAQKTSLTSISKDELKKVLGTARNLIPLGFNWHETDQDKTLMP
LGHDDLEIVSNGYQKARKQIGSLGGGNHFIEIQKGSDGFIWVMIHSGSRNLGYSVAKHYN
NIAKDLNAKWHSKVTPDMELAFLPMELDVAKAYISEMNYCVDFALANRKLMMQRMMESLT
EIKGDFEKDEIINESHNFAAWENHYNENVLVHRKGATRAFEGELGMIPGSQGTKSYIVRG
LGNPESFMSCSHGAGRKMGRKQAQRELDLTFEKKLLDDQDIVHAIRNVKDLDEASSAYKD
INIVMNNQKDLAEIVVELQPLAVLKG
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgtagtttctactgaacgtctaccaattaaaatgtggttatctgacctggaa
gaagaagcattaaatcaagctaaaaacttagctaatcttccatttgcatttaaacacatc
ccattaatgcccgatagtcatactggatacggaatgccaattggttctattctagcaact
aaaggagtagtggttccaaatgctgttggtgttgacataggctgtggaatgtgcgcccaa
aaaacgtctttaacgtccatctcaaaagatgaacttaaaaaagttttaggtaccgctaga
aatttaattccattgggatttaattggcatgaaacagatcaagacaaaacattaatgcca
ttaggacatgatgaccttgaaattgtttcaaatggttaccaaaaggcccgtaaacaaatt
ggatctcttgggggtggaaatcactttattgaaattcaaaaaggatctgatggttttatt
tgggtaatgattcattcaggaagtcgtaatcttgggtatagtgtagcaaaacactataac
aatatcgcaaaagacttgaatgcaaaatggcattcaaaagtgacacctgatatggaacta
gcatttttaccaatggaactagatgtagcaaaagcttacatatctgagatgaattattgt
gttgatttcgccttggcaaatcgtaaattaatgatgcaaagaatgatggaatcattaact
gaaattaaaggagactttgaaaaagatgaaatcattaatgaatcacacaattttgcagct
tgggaaaaccattacaatgaaaatgtacttgttcaccgtaaaggagcaactcgtgccttt
gaaggtgaattaggtatgattccaggatctcagggaactaaatcctacattgttcgtgga
ttgggaaaccctgaaagctttatgtcgtgctcacatggcgcaggaagaaaaatgggacgt
aaacaagcacagcgtgaacttgatctaacatttgaaaagaaattgctagatgatcaggat
attgttcatgcaataagaaatgtcaaagatctggacgaagcttcgtctgcttacaaagac
atcaatattgtaatgaataatcaaaaagatttagcagaaattgtggttgaacttcaaccg
ctagcagttttaaaaggataa
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