Paracrocinitomix mangrovi: K6119_12410
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Entry
K6119_12410 CDS
T07876
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
crm
Paracrocinitomix mangrovi
Pathway
crm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6119_12410 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crm03019
]
K6119_12410 (rnr)
03016 Transfer RNA biogenesis [BR:
crm03016
]
K6119_12410 (rnr)
Enzymes [BR:
crm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K6119_12410 (rnr)
Messenger RNA biogenesis [BR:
crm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K6119_12410 (rnr)
Transfer RNA biogenesis [BR:
crm03016
]
Prokaryotic type
tRNA degradation factors
K6119_12410 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
OB_RNR_1st
GLTP
FUR
Beta-barrel_RND_rel
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
UKN00535
LinkDB
All DBs
Position
complement(2703999..2706134)
Genome browser
AA seq
711 aa
AA seq
DB search
MGKNNKKGKTKLSKKLREDILSLFAENPNKQLNYKQVASFLEVHDGEIRKLIYTILNTLS
QEGLLKEVQRGKFKAMNIPKQSSKLIGVFDAGRRGSGYVIVEGFNEDIFISERNTGRAMN
GDTVAVELTRSKGKKLEGKITNVIERKNKLIVGSLDIQDHFSFLVPDDPKLNVDIFISGS
ALKGAQNGDKAIAEITDWPDTAKSPFGKIVEVLGRPESNEAEMKGILAANGIKFTFPDEV
LAEASQISMQLPEEEIANRRDFRDILTITIDPIDAKDFDDALSIEFLDKEMIRVGVHIAD
VGHYVKEGSQLDIEALERGNSVYLVDRVIPMLPEHLSNGVCSLRPDEDKFAFSAVFDLDM
NGDVHSQWFGKTVIRSKRRFAYEEAQEIIESGKGELSKEILTLDTIAKNLRDRRMKKGGL
EVNTSEIRFQLDEAGKPVEIFKKVQKDANKLIEEFMLLANKSVGKFVGDVKQKHPRELIY
RVHDKPDLEKVQQFAVFVSKFGKAFSFKNEDDIAKNMNKLFHEMRDEAEYNVIQSMAIKS
MAKAVYDTENIGHYGLGFEYYAHFTSPIRRYADLMVHRVLLNKLNGTKSRIEGMQKTAEH
ISQTERRAVEAERASKKYFQAVYLEDKEGEIFEGIITGLTDWGIYVELLENFCEGMISLK
SLRGDSYYFDENDYVVYGKRSGDEFNLGEHLRVKIAKVSLGRKQIDLELVE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacaataagaaaggcaaaacaaaattgagcaaaaagttacgtgaagacatc
ctaagtctttttgccgaaaaccccaataaacagttaaattataagcaagttgcaagcttt
ttagaagtccatgatggagagatcagaaagctcatctatactattttaaatacactaagt
caggaaggcttattgaaggaagttcagaggggtaaatttaaagctatgaatattcctaaa
cagtcaagtaagctgataggagtgtttgatgccggaagaagaggatcaggttatgttatt
gtagaaggttttaacgaagatatttttatttctgagaggaatacaggtagggccatgaat
ggagataccgttgctgttgaattgacacgaagcaaggggaaaaaactagagggaaaaata
actaatgttattgaaagaaagaacaaattgatagttggatcattagatatccaggatcat
ttttcattccttgttcctgatgacccaaaacttaatgtagatattttcatttctggttca
gcacttaaaggagctcaaaatggggacaaggcaattgctgaaattactgattggccggat
acagcaaagagcccatttggtaaaatagttgaagtacttggaagacccgagtccaatgaa
gctgaaatgaagggaattttagcggcaaatggaataaagttcacttttcctgatgaggtg
ctggcagaagcaagccaaatttctatgcaattacctgaggaagaaattgccaatagaaga
gattttagagatattttaaccattactattgatccaattgatgcaaaagattttgatgat
gcattgtcaatagaatttctggataaagagatgattagggtcggagttcatattgcggat
gttgggcattatgtgaaggagggatcacagttggatattgaggcacttgaaagggggaat
tctgtttatttggtagacagggttattccaatgttgccagagcatctttcaaatggtgtt
tgtagtttgcgtccggatgaagacaaatttgccttttcggcagtttttgatcttgacatg
aatggtgatgttcattcacagtggtttggtaaaactgttattcgctccaaaagaaggttt
gcctatgaagaagctcaagaaattattgagagtggaaaaggagagttatcaaaagaaatt
ttaacgcttgatacaatagccaaaaaccttagagatcgccgaatgaaaaaaggtggttta
gaagttaatacctctgaaatcagatttcagttagatgaggcaggcaagcccgttgaaata
tttaaaaaagttcaaaaggatgccaataaactgattgaagaattcatgcttttggccaat
aaaagtgtagggaaatttgttggtgatgtaaaacaaaaacatccgagagaattgatttat
agggttcacgataaaccagaccttgaaaaagtgcagcaatttgctgttttcgtttcaaag
tttggaaaggcgttttcgtttaaaaatgaagatgatattgccaaaaacatgaataagtta
tttcatgaaatgagggatgaggcggagtataatgtgattcaatcaatggcaataaaatca
atggctaaggctgtttatgacacggagaacatagggcattacggtctggggtttgaatat
tatgctcactttacttctccaattaggaggtatgccgatttaatggtgcacagggtgctc
ttgaataaattaaatggcactaagtcgcgaatagagggtatgcaaaagacggctgagcat
atttcacaaactgaaagaagagctgttgaagccgaaagagcttctaaaaagtatttccag
gctgtttatttggaagataaagagggtgaaatctttgaaggaataatcacaggtttaacc
gattggggaatatatgtagaattgcttgaaaacttctgtgaaggaatgatttctcttaaa
agcttgagaggcgatagctattactttgacgagaatgattacgtggtatatggaaaaaga
tcaggtgatgaatttaacctgggtgaacaccttagagttaaaattgcaaaggtttcatta
ggaagaaaacagattgacctagagttggttgaataa
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