Paracrocinitomix mangrovi: K6119_13660
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Entry
K6119_13660 CDS
T07876
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
crm
Paracrocinitomix mangrovi
Pathway
crm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6119_13660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crm03019
]
K6119_13660
Enzymes [BR:
crm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6119_13660
Messenger RNA biogenesis [BR:
crm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6119_13660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Utp25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKN00775
LinkDB
All DBs
Position
complement(2996836..2998065)
Genome browser
AA seq
409 aa
AA seq
DB search
MKFEDYRISIELKTNLKKMGFKRPTDIQFKCIPHIQKGEDLLAIAQTGTGKTAAFAIPIL
DKIQFIKKKTKTHAIRAIVMVPTRELAIQITNVFHELGRNTKVRTQCIYGGVEQDPQIDA
LLKGVDIMVTTPGRMFDLASQGYIQMDKVEVVILDEADHMLDLGFYKDIKDLVRYLPNSR
QTLFFSATIDEKIKKLAYSLVKNPIRIQISPKDPVSKNVDHSVAFIEMDDKRFFLERLIK
ENEDLKFLVFVRTKVRAERVTAAMERVQIKSETIHGDKEQRDREEVLSRFKTGKNKILIA
TDVSARGIDIPDVDYVINYDLPEQAENYVHRVGRTGRGKKRGLALAFCAKNEIEILKQIE
SYITVPIKRAEIDSSEYQETILFSDDGSNNWKKLLEQEELDKKKKRKGK
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagattaccgcatttctattgaattaaaaaccaatttgaaaaagatgggc
tttaaaagacccaccgatattcagtttaaatgcattccacacattcaaaaaggagaagat
ttattagccattgcccaaacaggtaccggtaaaactgctgcttttgctattcctatttta
gataaaattcaattcataaagaagaaaaccaaaactcatgctattagagcaatagttatg
gtacctactagagaattggctattcaaataaccaatgtttttcatgaattaggaagaaat
acaaaggtaagaactcagtgtatttatggtggagttgaacaagatcctcaaattgatgct
ttgttaaaaggagttgacatcatggtaaccacacctggtagaatgtttgatttggcaagt
caaggttatattcaaatggacaaagtagaggttgttattttagatgaagcggatcacatg
ttagatcttggattctataaagacatcaaagatttggtaagatatctgccaaatagcaga
caaacgcttttcttttcagctacaatagatgagaagattaaaaaactagcttattcgctg
gtaaaaaatccaatccgaattcaaattagtcctaaagatccggtatctaaaaacgttgac
cattctgtcgcctttattgaaatggatgataagagattctttttagagagattgattaag
gagaatgaagatttaaaattcttggtttttgtgcgtaccaaagtcagagccgaaagggtt
acggctgctatggaaagagttcaaataaaatctgaaactattcatggggataaggaacaa
agagatagagaagaagttttaagtcgttttaaaaccggtaaaaacaagattttaatcgca
acagatgtttccgcaagaggaatagacatcccagacgtagattatgtaattaattacgat
ttacctgagcaagcagaaaactatgtgcacagggttggacgtacaggaagaggtaaaaaa
agagggttagcacttgcattttgtgcgaaaaacgaaatagaaatattaaaacaaattgaa
tcttatattactgttcctattaaaagggctgaaatagattcaagtgaatatcaggaaact
attttgttttcggatgatggatcaaataactggaaaaagttattggaacaagaagaatta
gataaaaagaaaaaaagaaaagggaagtaa
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