Paracrocinitomix mangrovi: K6119_13980
Help
Entry
K6119_13980 CDS
T07876
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
crm
Paracrocinitomix mangrovi
Pathway
crm02020
Two-component system
crm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K6119_13980 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K6119_13980 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crm03021
]
K6119_13980 (rpoN)
Transcription machinery [BR:
crm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K6119_13980 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Peripla_BP_2
HTH_12
SF3b1
NES_C_h
Motif
Other DBs
NCBI-ProteinID:
UKN00839
LinkDB
All DBs
Position
3081459..3082919
Genome browser
AA seq
486 aa
AA seq
DB search
MLRQQLSQKLLQKLSPQQIQLMKLLQVPTMELEQRIKEEIEENPALEEGKEDHDDDYGSE
DDYNDDLGEVSESQEDFDINDYLDDDLPQYKTSVSNQGRDDDDKAVPISGGVSFHEILKD
QLMLRKMTDKERVIAENIIGNIDDDGYLRREIEAIVDDLAFTQNVMCTEEEVEDVLFLVQ
DLEPAGVGARDLRECLLLQLERRHHGNIAVYTAKKILEKCFEEFTKKHYDKIKAKFEISD
EDLKDAVDEITKLNPKPGNSLKESTNSKNIQQIIPDFILTEEEGELSLSLNSRNAPQLKV
SKSYETMLRNYAEGAKSSKADKEALTFVKQKLDAAKWFIDAIYQRQQTLMFTMKAILEYQ
KEYFLTGDETNLKPMILKDIADIVGMDISTISRVANSKFIQTPYGIMSLKYFFSESLSTT
DGEEVSTREVKKILEDAIEGEDKKKPLTDQKLTDLLKEKGYNIARRTVAKYREQLNIPVA
RLRKEL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgttaagacagcagctaagtcaaaaattacttcaaaaactttctcctcaacaaattcag
ttgatgaagttgttacaggtgcctactatggaacttgagcaacgcatcaaagaagaaatt
gaggaaaatcctgctttggaagaaggcaaagaagaccatgatgatgactatggctctgag
gatgattataatgacgatttaggagaagtttctgaatcacaagaagattttgacatcaac
gattatctggatgatgatcttccccaatacaaaacatctgtttcaaatcaaggtagagat
gatgacgataaggcagttccaatttctggaggtgtttcttttcatgagatcttaaaagat
caattgatgttgcgtaaaatgacggataaggaaagagtcattgctgaaaacattattgga
aacattgatgatgacggttacttgcgaagagagattgaagcaattgttgatgatctagcc
tttacacaaaacgtgatgtgtactgaagaggaggtagaagatgttttattccttgttcag
gatttagaaccggcaggtgtaggagcaagagatttaagagaatgtcttttattgcaattg
gaaagacgtcaccatggaaatattgcagtttatacggcaaaaaagatattggagaagtgt
tttgaagagtttaccaaaaaacactacgataaaataaaggccaaatttgaaattagtgat
gaagatttgaaagatgcagttgatgaaatcaccaaattgaatcctaagcctggtaattca
ctgaaagaatctaccaactctaaaaatattcaacaaatcattcctgattttattcttact
gaagaagaaggggagttgagtttgtcattaaatagccgaaatgcacctcaattaaaagtg
agcaagtcatacgagacaatgcttagaaattatgctgaaggtgccaaaagctcgaaagcg
gataaagaagcactcacttttgtgaagcaaaaattggatgctgcaaaatggttcattgat
gccatttatcaaagacagcaaactttgatgtttaccatgaaagccattttagagtaccaa
aaagagtactttttaacgggtgatgaaacaaatcttaaaccaatgatcctaaaagatatt
gcagatatcgttggtatggatatttcaactatttctcgtgtggctaacagtaaattcatt
caaacaccatacggtatcatgtccttgaaatactttttctctgaatcgctatctacaact
gatggagaagaggtgtcaaccagagaggtgaaaaagatacttgaagatgctattgaaggt
gaagacaagaaaaagcctttaacagatcaaaagttaacagatcttttaaaagaaaaagga
tacaacattgccagaagaaccgtggcaaaatatcgcgaacaattaaatatacctgtagca
agattgcgtaaggaattgtaa
DBGET
integrated database retrieval system
