Carnobacterium sp. 17-4: CAR_c02520
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Entry
CAR_c02520 CDS
T01452
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03030
DNA replication
crn03430
Mismatch repair
crn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAR_c02520 (holB)
03430 Mismatch repair
CAR_c02520 (holB)
03440 Homologous recombination
CAR_c02520 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crn03032
]
CAR_c02520 (holB)
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c02520 (holB)
Enzymes [BR:
crn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAR_c02520 (holB)
DNA replication proteins [BR:
crn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CAR_c02520 (holB)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CAR_c02520 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AEB28987
LinkDB
All DBs
Position
253207..254193
Genome browser
AA seq
328 aa
AA seq
DB search
MKIEEKLIWLQPLLLKQFKKTVQQKQLAHAYLFEGVSGTGKKEMSLWLAASLLCKESSGN
LPCENCQNCRRVFEHQHPDVIEIVPEGLSIKVEQVRNLKAEFSKSGVESQQKIFIVEDVE
KMTPGAANSLLKFLEEPEGSAVAFLLTTAKNRILPTILSRCQLVHFQSLTKKKLMAELET
RGLSVNQASLLVQLTNSVEEAIELNGDEWFQEAKTIIWKWFTLITNKDNQSFVYVQTTIM
PHFKDRDAHRRLVDLILLAYRDILMLHYGTVDVLAYARYQKELDHIKTEYSSKAVVQAIE
AVLLSRKKLESNVNAQGVFEQLVLQLMK
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgaagaaaaattaatttggctacagcctttattactcaagcaattcaaaaaa
acggtacagcaaaaacaattagctcatgcgtacctttttgaaggcgtttcaggaaccgga
aaaaaagagatgagtttgtggttagcagctagtttactttgcaaagagagctctggaaat
ctcccatgtgaaaactgccaaaactgtcgacgcgtctttgaacaccaacatccagatgtg
atagaaattgtgccagagggcttatctataaaagtagaacaagttcgtaatttaaaagcg
gagttttcaaaaagcggtgtagaaagtcaacagaagatcttcattgttgaagatgttgaa
aagatgactccaggggctgcgaatagtttgctcaaatttttagaagaaccggaaggcagc
gccgtagcatttttattgacaactgctaagaaccgcatacttccaactattttatcgaga
tgtcagttggttcattttcaatctttaactaaaaagaaattgatggctgaacttgaaact
agaggactttcagttaatcaagcttcattgttagtgcaattgactaatagtgtagaagaa
gctattgaactaaatggagacgaatggtttcaagaagctaaaacgattatttggaaatgg
tttacactaattacaaataaagataatcaaagttttgtttacgtacaaacaacgatcatg
cctcattttaaagatcgcgatgcacatcgaaggttagtggatttaattttgttagcctat
cgagacatattgatgctccattatggtacagttgatgtattagcatacgcacgttaccaa
aaagaactggatcacattaaaacagagtattcaagtaaagccgttgtgcaagctattgaa
gcagtcttactcagtcgcaaaaaactagagagtaatgttaatgctcaaggtgttttcgaa
cagctggtcttacaattaatgaagtaa
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