Carnobacterium sp. 17-4: CAR_c04120
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Entry
CAR_c04120 CDS
T01452
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAR_c04120 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crn03019
]
CAR_c04120 (rnr)
03016 Transfer RNA biogenesis [BR:
crn03016
]
CAR_c04120 (rnr)
Enzymes [BR:
crn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAR_c04120 (rnr)
Messenger RNA biogenesis [BR:
crn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAR_c04120 (rnr)
Transfer RNA biogenesis [BR:
crn03016
]
Prokaryotic type
tRNA degradation factors
CAR_c04120 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
RNase_II_C_S1
TRF
Motif
Other DBs
NCBI-ProteinID:
AEB29132
LinkDB
All DBs
Position
423917..426280
Genome browser
AA seq
787 aa
AA seq
DB search
MNDKKALQEAILVFMDEHKKVSFQVSDISEGMGLTSAADFKVLVSSLAEMEREGKLFLNK
KGHFKLPSNDPILTGTFRASDRGFGFVAIEDEEKDIYIPPNMTNYALDGDKVTVDIIKPA
EPWSDKGAEGKINAIIERKFTQLVGEFYAYSEEGIEETGLYGYIDPQDKKITDIRVFIES
EGIKPVDGSIVVVEITLYPDDEFPRSMQGIVKKVVGHINDPGIDILTIVYKHGIPTEFSP
EAIQQADEVPDSIKESDFEGRRDLRNEVLVTIDGEDAKDLDDAVGLKLLDNGNYQLGVHI
ADVSYYVTEDSPLDKDAFERGTSVYLTDRVIPMIPQRLSNGICSLNPHVDRLTMSCLMEL
TPDGEIVGQDIFQSVIRTTERMTYTEVNEILTDKNPETREKYSSLVDMFELMENLHHTLE
KKRKSRGAIDFDTKEAKIIVDPEGKPLDIVLRERGVGERLIESFMLAANETVSEHFSKME
VPLIYRIHEQPDSDRMQKFMEFVTAFGITVKGTSQDVSPKTLQTVVNSVKGKPEEQVVST
MMLRSMKQAKYDVEPLGHFGLGAEFYSHFTSPIRRYPDLILHRLIRSYGEKGTGSAQKAK
WENRLPDIAEQTSKAERRAVDAERETDALKKTEFMADKVGEIYEGIIGSVLKFGLFVELP
NTVEGLVHISNMKDDYFNYIEEQMMLVGERTGVVYRIGQKVKVKITKADPETREIDFELV
PDPNAPKYDGPKRSTKGRGRGNSQTRGKESGSKEKFSSYKPKEKETSKKKSKPFYKEVAK
NKKPKKK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaaaaaagcgttacaagaagcgattttagtttttatggatgaacataagaaa
gtttcgtttcaagttagtgatatcagtgagggaatgggtttgactagtgcagccgatttt
aaagtccttgtcagttcattagctgaaatggagcgagaaggtaaactctttttaaacaaa
aaagggcactttaagttaccaagtaatgatcctattttaaccggtactttcagagcaagc
gatcgaggttttggatttgttgcaatcgaagatgaggaaaaagatatttatatcccacct
aatatgaccaattatgcattagatggagataaagtaacggtagacattatcaaacctgca
gaaccttggtcagataaaggtgctgaaggaaagataaatgctattattgaacgtaaattt
actcaattagttggggaattttatgcgtacagtgaagaaggaattgaagaaactggttta
tatggttacatcgatcctcaagataaaaaaattacagacattcgtgtctttattgaatca
gaagggatcaaaccggttgacggttctattgttgtcgtagaaataacgttgtatccagat
gatgagtttccaagaagtatgcaggggattgttaaaaaagttgtagggcacataaatgat
ccagggatcgacattttaacaatcgtatacaaacatggtatcccaactgaattttcgcca
gaggctatacaacaagcagatgaagtaccggacagtattaaagaatctgattttgaagga
cgtcgtgatttaagaaatgaagtccttgtgacaatcgatggagaagatgcaaaagactta
gatgatgctgtaggcttgaaattattagataatggaaattatcaacttggcgttcatata
gcagatgtttcctattatgtaacagaagatagccctttagacaaagatgcatttgaaaga
ggaaccagtgtatacttaaccgatcgagttattccaatgattcctcaacgtttatctaat
ggaatctgttcgttaaaccctcatgtagaccgtctaacgatgagctgtttgatggaactg
acaccagatggagaaattgtcggacaagatattttccagagtgtgatacggacaactgaa
cggatgacttatactgaagtaaacgaaatattaacggataagaatccagaaacacgtgaa
aaatatagtagcttagtagatatgtttgaattaatggaaaatctgcatcacacacttgag
aaaaaacgcaaatctcgtggagcgattgactttgatacaaaagaagctaaaattattgtt
gaccctgaaggcaagcctttagatattgttttaagagaacgcggtgttggtgaacgcttg
attgaatcattcatgttggcagcgaacgaaacggtatctgagcatttttctaaaatggaa
gttccgttaatttaccgtatccatgaacaaccggatagcgatcgtatgcaaaaattcatg
gaatttgttacagcattcggtattaccgttaaaggtactagccaagatgtttctcctaag
acattacaaacagtcgttaatagtgttaaaggtaagccagaagaacaagttgtttcaacg
atgatgttacgaagcatgaagcaagcaaaatatgatgtagaaccattaggtcactttggt
cttggagcagaattctattcacacttcacgtctccaattcgtcgttaccctgacttgatc
ttacaccgtttgattcgttcatatggtgaaaaaggaacaggatctgctcaaaaagcgaaa
tgggaaaatcgtttaccggatattgctgagcagacatcaaaagcggaacgtcgtgcggtc
gatgctgaaagagaaacggatgcattgaagaaaactgaatttatggctgataaagttggc
gaaatttatgaaggaatcattggttcggtgttgaaatttggtttgtttgttgaattgccg
aatacagttgaaggtctggtccatatttcaaatatgaaagacgactactttaattatatc
gaggagcaaatgatgctcgttggagaacgtactggggtcgtttaccgtattggacaaaaa
gtaaaagtgaaaataaccaaagctgatcctgaaacacgtgaaatcgattttgaactggtt
ccagatccgaatgcacctaaatatgatggacctaaacgttcaacaaaaggtagaggtaga
gggaatagtcaaactcgtggaaaagaaagtggttcaaaagagaaattttcatcttataaa
cctaaagaaaaagaaacaagcaaaaagaaaagcaaacctttttataaagaggtagctaaa
aataaaaaacctaagaaaaaataa
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