Carnobacterium sp. 17-4: CAR_c04470
Help
Entry
CAR_c04470 CDS
T01452
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAR_c04470 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crn03019
]
CAR_c04470 (rhlE)
Enzymes [BR:
crn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAR_c04470 (rhlE)
Messenger RNA biogenesis [BR:
crn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAR_c04470 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
SMC_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEB29167
LinkDB
All DBs
Position
complement(462203..463474)
Genome browser
AA seq
423 aa
AA seq
DB search
MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL
QNIMEEKTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATL
KRGTDILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ
SMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLLKN
KQVERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVLVAT
DIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRDIEK
LSKRKVPVIKDHPYLLKEGTQAPTQQARKAVATRNSGTRAKSKQVRRGGQKAAQRPRVQT
KNR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttaatgaattagaattgaaccaacacctattgcacgcactgaaagaagcaggc
tatacgaaagcaacacctatccaagaggatgccattccgcatctgatgaacaacaaggac
ttgttgggttgtgcccagaccggtactggtaagacagctgcctttgccttacccatcctt
caaaatattatggaagaaaaaacaattggaaaaggtgccatcaaagccttaatccttgct
cctacacgtgagcttgccatacaaatcggtgatagtttccaaacatacgctaaatacctt
ccattgaatatccaagtaatttttggtggcgtttcgcagaatcctcagacagccacgctg
aaacgcggaacggatatcctagtcgcgacgccaggcagactattggaccttatcagacaa
ggatttgtcaagctgaaccaggttgatttcttcgtcttggacgaagccgatatgatgttg
gatatggggatgctacgtgatgtacgccatattatccgagaattgcctaagaaacgtcaa
agcatgttcttttcagcaacgatgccgagtgaaatcgaaaaacttgcaggaaccatttta
tcaaacccggtaaaagtggtggtcaatccggtttcatcaactgttgaagtcatccaacag
aatgtttatcgagtagccaagaccgacaaaactaacctacttatctatctcttgaagaat
aagcaggttgagcgctccctagtcttctccagaaccaagcatggtgccaacaaaattgtc
aaaaaacttttgcaagcgggtttctccgccgaagcgattcacggcaacaagtctcagaat
gcgcgtcagcaagctttagaaaacttcaagaccatgaaaactagcgttctagtagcgaca
gatatcgcagcccgtggtatcgatgtgcctgagctttcgcaagttatccaatttgacttg
cctgaagttccagaaacctacgttcaccgtatcggccgtacaggacgcgcagggctaagt
ggaaaagctatctctttctgtgatgaaacagaatcagacttgttgcgcgacattgaaaaa
cttagtaagaggaaagttccagtcataaaagatcatccttatcttttgaaagaaggcact
caagcaccaacacagcaggcgagaaaagctgttgccacgcgcaatagtggaacacgcgct
aaaagtaaacaagttcgaagaggaggtcaaaaagccgcacaaagacctcgtgtacaaacg
aaaaacaggtaa
DBGET
integrated database retrieval system
