Carnobacterium sp. 17-4: CAR_c08790
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Entry
CAR_c08790 CDS
T01452
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAR_c08790 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crn03019
]
CAR_c08790 (rnjA)
Messenger RNA biogenesis [BR:
crn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAR_c08790 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AEB29573
LinkDB
All DBs
Position
complement(907931..909715)
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AA seq
594 aa
AA seq
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MKPSIKNNEAAVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY
IVQNIHKVKALVITHGHEDHIGGIPFLLRQANIPIYAGPLASALIRNKLTEHGLLRDTVL
HEIGEDDVIKFRKTSVSFFRTTHSIPEAFGIVVKTPPGNIVLTGDYKFDFTPVGKPANLH
RMAKIGDEGVLALLSDSTNAEIPTFTKSEQVVGESITSIMQKVEGRIIFATFASNISRLQ
QVANAAIKTGRKIAVFGRSMESSVATGRQLGYITAPEETFIEPRDINRLPAKESIILCTG
SQGEPMAALSRIANGTHRQISIQPGDTVIFSSSPIPGNTSSVNRVINLLSEAGADVIHGR
VNNVHTSGHGGQQEQKLMLRLMKPKYFIPVHGEYRMQKIHAGLAELVGIPKENSFILDNG
DVIALTADSAREAGHFEAGDVYVDGKGIGDIGNVVLRDRKLLSEEGLVVVVVTIDYKSKE
VLAGPDILSRGFIYMRESGELINDAQQVMTKSLNKSLANDKVTEQSLKNTIIESLKPFLF
ERTERHPMIYRLLCLFNQYKKARPTFYRVLGEPFLLVFNKVVDWFFPFFIIINL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttctataaaaaataatgaagctgctgtctttgccattgggggtttaggggaa
attggtaaaaatacgtatggtgttcaatttcaagatgaaatcatcattattgacgctggt
attaaatttcctgaagacgacttattaggaatcgattatgttattcctgattacagttac
atcgttcaaaatatccataaagttaaagctttagttatcacacatggacatgaggatcat
attggaggtattcctttcttattaagacaagccaatattccaatttatgccggaccatta
gcttctgctttaattcgtaacaagttaactgaacacggcttattgcgtgatacagtattg
catgaaattggtgaagatgacgttataaaattccgtaaaacaagtgttagtttttttaga
acgacacacagtattcccgaagcttttggtattgtcgttaagacaccacccggcaacatc
gttctaactggagattacaaatttgattttactccagtgggcaaaccagcaaacttgcac
agaatggctaaaataggcgatgaaggtgtactagctcttttatctgatagtacaaatgct
gaaattcctactttcactaaatctgaacaagtcgttggagaatcgatcacaagtatcatg
caaaaagtagaaggccgtatcatttttgcgacttttgcttctaacatttctcgtttgcaa
caagttgcaaatgcagcaatcaaaacaggtcgcaaaatagctgtttttggtcgtagtatg
gaatcatctgttgcaactggtcgtcaattaggctatattactgctccagaagaaacattt
attgaaccaagagatattaatcgtcttcctgcaaaagaaagtattattttatgtactgga
tcacaaggtgagccaatggcagccttgagtcgtatcgctaatggtacccatcgtcaaatt
tctattcaacctggcgatacagtaattttttctagctctcctatcccaggaaatacttca
agtgtaaatcgtgtcattaatttactctctgaagctggtgcagacgttattcatggaaga
gtaaataatgttcatacttctggacatggtggtcaacaagaacaaaaattgatgcttcgt
ttaatgaaacctaaatactttattcctgttcatggtgagtacagaatgcaaaaaattcat
gcgggacttgctgaattagtaggaatccctaaagaaaattctttcatcttagacaatgga
gatgttatagctttaacggctgattcagccagagaagctggacactttgaagctggggat
gtttatgtagatggtaaaggaatcggagatatcggaaacgttgttttacgtgaccggaaa
ttgctatctgaagaaggtttagttgtcgtcgttgtaacgattgattacaagtctaaagaa
gtgttagcaggtcctgacatcttatctcgcggatttatttatatgcgtgaatctggagaa
ttaattaatgatgcacaacaagttatgactaaaagtttaaataaaagtttagcaaacgat
aaagttaccgaacaatctttaaaaaatacaattatcgagagtttaaaaccatttttattt
gaacgtactgaaagacaccctatgatttaccggttattatgcctgtttaatcaatataaa
aaggctcgcccaacattctatagagtgttgggcgagccttttttattagtgttcaataaa
gtggtagattggttcttcccgttctttatcataattaacttgtaa
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