Carnobacterium sp. 17-4: CAR_c09420
Help
Entry
CAR_c09420 CDS
T01452
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAR_c09420 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crn03019
]
CAR_c09420 (pnpA)
03016 Transfer RNA biogenesis [BR:
crn03016
]
CAR_c09420 (pnpA)
Enzymes [BR:
crn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CAR_c09420 (pnpA)
Messenger RNA biogenesis [BR:
crn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CAR_c09420 (pnpA)
Transfer RNA biogenesis [BR:
crn03016
]
Prokaryotic type
tRNA degradation factors
CAR_c09420 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
SPATA25
CvfB_2nd
S1_RRP5
M20_dimer
Motif
Other DBs
NCBI-ProteinID:
AEB29635
LinkDB
All DBs
Position
969383..971536
Genome browser
AA seq
717 aa
AA seq
DB search
MEKRIKALIKGEMHTMTEKQVFTKEWAGRTLEIEVGQLAKQANGAALIRYNDTVVLSAAV
ASKKAKDVDFFPLTVNYDEKMYSVGKIPGGFIKREARPSEAATLTARLIDRPIRPMFAEG
FRNEVQITNTVMSVDQNCSPAFSAMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPT
LEQEALSDIHLTVAGTKDAINMVESGAAEVSEEDMLGALMFGHEAIQELVAFQEEIVAAV
GKEKMTIQLLQIDADLEKEVNDAFQTKMIAAIQTEEKLAREENIEAVKEEAMTFYEEKYQ
DNDEAKRINKEVKQIVEDMEKNEVRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSG
LFTRGQTQALSIATLAPLGEHQIIDGLGIENSKRFIHHYNFPQYSVGSTGPSRGPGRREI
GHGALGERALAQVIPSEEDFPYMIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPV
AGIAMGLVKEGENYTVLTDIQGLEDHLGDMDFKVAGTSKGITALQMDIKIEGITQQILEE
ALTQAKKARMEILDELISTIAEPHEELSAYAPKIEMMQIKPEKIKVVIGRGGDQINAIIE
ETGVKIDIDQEGNISIASEDAAMIRRAKEIIEELTKDIEVGKIYSGKVKRIEKFGAFVEI
AKGKDGLVHISELANERVAKVEDVLTLGEVMDVKVIEIDKQGRINLSRKVLLTTEEA
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaacgaataaaagctttaataaaaggagaaatgcacacaatgacagagaaacaa
gtttttactaaagaatgggcaggtcgcacattagaaattgaagttggacaattagcaaaa
caagctaatggtgcagcattgattcgctataacgatactgtagtgctatctgcagcagta
gctagcaaaaaagcgaaagacgtagatttctttcctttgacagtaaattacgatgaaaaa
atgtattcagtcggtaaaatcccaggtggttttattaagagagaagcacgcccaagtgaa
gcggctactttaacagctcgattaattgaccgtccgattcgtccgatgtttgcagaagga
tttcgtaatgaagttcaaattacaaatacagtgatgtctgtagatcaaaactgttcacca
gctttttcagcaatgtttggttcttctttatcacttgctatttcagatattccgtttaac
ggaccgattgcaagtgttgatgtaggccgtgtagacggagaatacatcattaatccaact
cttgagcaagaagcattatcagacattcatttaacagttgcaggaactaaagatgccatt
aatatggtcgaaagtggagctgctgaagtttcagaagaagatatgcttggtgctttaatg
tttggtcatgaagcaattcaagaattagttgctttccaagaagaaatcgtagcggctgtt
ggaaaagaaaaaatgactattcaattgttgcaaattgatgcagatttagaaaaagaagtc
aacgatgctttccaaactaaaatgattgctgcaattcaaaccgaagaaaaattagctcgt
gaagaaaatatcgaagcggttaaagaagaagcaatgactttttatgaagaaaaatatcaa
gacaatgatgaagctaaacgaatcaataaagaagtaaaacaaattgttgaagacatggaa
aagaatgaagtccgtcgtttgattacagttgacaaaattagaccagatggtcgtaaaatt
gatgaaattcgttctttagcttcagaaattggactattgccaagagcacatggttctggt
ttattcactcgtggacaaactcaagcattgtctatagctactttagcaccattaggcgaa
catcaaattattgatggtctaggaattgaaaacagcaaacgattcatccatcactacaat
ttccctcaatactctgttggaagtactggaccatcacgtggaccaggtcgtcgtgaaatt
ggacatggagcattaggagaacgtgcattagcacaagttattccaagtgaagaagatttc
ccatacatgattcgtttagttgctgaagttttagagtcaaatggttcttcatcacaagca
agtatttgtgcaggcactttagctttaatggatgcaggtgttccaatcaaagctccagta
gctggtattgcaatgggacttgttaaagaaggcgaaaactatactgtcttaacagatatt
caaggtttagaagatcatttaggcgatatggactttaaagtagcaggtactagcaaagga
atcacggctcttcaaatggatattaaaattgaaggtatcacacaacaaattttagaagaa
gcgttaactcaagctaaaaaagctagaatggaaattcttgatgaattgatttctacaatt
gctgagcctcatgaagaattaagtgcctacgctcctaaaattgaaatgatgcaaattaaa
ccggaaaaaattaaagttgttattggccgcggtggtgaccaaatcaatgctattattgaa
gaaaccggcgttaaaattgatatcgatcaagaaggaaatatcagtattgcatctgaagac
gcagctatgattagacgcgctaaagaaattattgaagaattaacgaaagatatcgaagtc
ggtaaaatttattcaggaaaagtaaaacgaattgaaaaattcggagcttttgttgaaatt
gctaaaggaaaagatggattagttcatatttctgaattagctaacgaacgtgtcgctaaa
gttgaagatgttttgactttaggcgaagtaatggacgttaaagttatcgaaatcgataaa
caaggaagaattaatctttctcgtaaagtgttgttaacaactgaagaagcttaa
DBGET
integrated database retrieval system
