Carnobacterium sp. 17-4: CAR_c10090
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Entry
CAR_c10090 CDS
T01452
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03030
DNA replication
crn03430
Mismatch repair
crn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAR_c10090 (dnaE)
03430 Mismatch repair
CAR_c10090 (dnaE)
03440 Homologous recombination
CAR_c10090 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crn03032
]
CAR_c10090 (dnaE)
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c10090 (dnaE)
Enzymes [BR:
crn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAR_c10090 (dnaE)
DNA replication proteins [BR:
crn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CAR_c10090 (dnaE)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CAR_c10090 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
TubZ-like_C
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEB29702
UniProt:
F4BQ97
LinkDB
All DBs
Position
1038283..1041621
Genome browser
AA seq
1112 aa
AA seq
DB search
MSFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIK
PILGLTLDVGGVVNNEETYSIILLAKNARGYESLMALSSEKMLLTENEWLTIEHISQYSQ
NLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYLGIQLHQKLKVIQDAVNE
LANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQEAEEGEYYLPESNEVEKL
FKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPKDTVTTEFLKEQCLKGLTLRVVQ
PDERYTKRLEYELAVIQKMGFEDYFLIVWDVMAYAHKVKIVTGAGRGSAAGSLVAYLLEI
TDVDPIEYNLLFERFLNEERYTMPDIDLDFPDNRREEILHYVKNKYGQNHVAQIATFGTL
AAKMALKDVARVFGLSPSEANVWSKAIPKILGITLEKAYKESVTLRKLVEENDKNKLLFK
TAKRIEGLPRHISTHAAGIVISDNPLTQYVPLQKGGGEILLTQYPMGNVEEIGLLKMDFL
GLKNLTIIDNTLKLVQRETGKRLDLLTIPMQDQETLQLFRQADMVGIFQFESTGIKNVLR
RLEPSSIEDIAAVNALYRPGPMEQIDTFIKRKKGVLPIEYPHESLSEILAVTYGVMVYQE
QVMQVAAKMGGYTLGQADILRRAIGKKQKSIIDKERHHFISGANQLGYTKEVAMQVYDYI
ERFANYGFNRSHAVAYSFIAYQMAYLKAHYPNAFFVALLNSALNSSAKMKEYIIEAKKRK
IKVIPPNINTSFSGFTLTENNILFGFNSIKGLRRDMIVEMIQNRKSDGKYLGLIDFLKRL
DKKWLKPEYIKPLIYAGAFDQFDYSRGALLASVDGIVQSIKMSGNNIDLFELLKPKYEFA
PDLTLEEKLETEEQYLGTYLSGHPTEKYDQLRQWKQVEYTSELTIGKTSRIIGMVKNVHK
IRTKKGESMAFVTISDTSGDCSLTLFPTKYRQFIDFLNNGTILYVSGKVDSKREDTPQMI
VGQMENVEKVMDSYTTKKCFIRILDVQNTNETLEKMKKIMMKAKGNIPVVLYYVQTNKKI
VLAEENWIHDTPELIEQLEELLGKENVVIKNS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgtacaattacaggttattagttcttatagtttattacaaagtacaacttca
attgaagaattagtggtcaaagcaaaagaaagaggttatcgagcgatcgccttaaccgat
cacaatgtcttatatggaatggttgacttttataaaatgtgcaaaaaacatcagattaaa
cccattttagggttaacattagatgttggcggcgttgtaaataacgaagagacttattcg
attattttattagctaaaaatgctagaggatatgaaagtttgatggctctttcaagtgag
aaaatgttattaactgaaaatgaatggcttacaattgaacatataagtcaatacagtcaa
aatttaatcgcaataacacctggagaaaaaggggagacagaatcctttttactacaagat
gaaaaaaaatcagcagcaaaagttgtcggaaaatggcaagcggcttttcctaagcaacaa
ttttatcttggcatacagttgcatcaaaaacttaaggtaatccaagatgcagtaaatgaa
ctagcaaatgaaacaggcactttaacagttgctttgcaagatattcggtacatcgatgca
gctgacgactttagcactacagtattaagagcaatcaataagggagaggtcctatccaat
caacaggaagctgaagaaggcgagtattatttacctgaaagcaatgaggtagaaaagtta
tttaaagataacggattggaacaagctgctcaacaaaccaacgaggtagctaaaatgatt
gatgcagatatatccctgcatcaacaattattgccaaaatttcctttacctaaagacaca
gtgacaacggaatttttaaaagaacaatgtttaaaagggttaacgttgagagtagttcaa
ccggatgagcgatacacaaagcgattagagtatgagttagccgttattcaaaaaatggga
tttgaagattactttttaattgtgtgggatgtcatggcttacgctcataaagtaaaaatt
gttacaggtgcaggtagaggttcagcagctggatctttggtagcttatttgcttgaaatc
acagatgttgatccaatagagtacaatttattatttgaacgatttttgaatgaagaacgc
tatacaatgcctgatatcgacttggattttcctgataatagacgtgaagaaattttgcat
tatgtaaaaaataagtacggtcaaaatcatgttgctcagatagccacttttggaacattg
gcagctaaaatggctctaaaagatgtagcacgagtatttgggctaagcccttcagaagca
aatgtatggtcaaaagccattccaaaaatattgggcatcactttagaaaaagcctataaa
gaatcagtaacactcaggaaattagttgaagaaaatgataaaaataaattgctgtttaaa
acggccaaaagaattgaaggtttgcctcgacacatatcgacacatgcagcaggaattgtt
atcagtgataacccactaactcagtatgttcctttgcaaaaaggtggaggagagattctg
ttaacacaatatccgatgggaaatgtagaagaaatcggattgttaaaaatggacttttta
gggttgaaaaatttaacgatcattgacaacacgctaaaacttgttcaaagggaaactgga
aaacgcttggatcttttgactattccaatgcaagatcaagagactcttcaattattccgt
caagcagatatggtggggatttttcaatttgaatctactggaataaaaaacgttcttcgt
agattagagccttcttcaatcgaagatatcgcagctgtaaatgctttgtatcgtccaggt
ccaatggaacaaatcgatacctttattaaaaggaaaaaaggtgttcttcctatagaatac
cctcatgaaagcttgtcagaaattttagcggtcacttatggtgtcatggtgtaccaagaa
caagtcatgcaagtggctgccaaaatgggtgggtacacgttaggtcaagcggatatttta
agacgagcgattgggaaaaaacaaaaatccattattgataaagagagacatcattttatt
tctggtgcaaaccaattagggtacactaaagaagtggccatgcaagtttatgattatatc
gaacgatttgcgaattatggtttcaaccgttcccatgcagtggcctactcgttcatagct
tatcagatggcctatttaaaagcgcattacccgaatgctttttttgtggcgctattaaat
tcagccttaaacagttctgctaagatgaaagaatacattattgaagcgaaaaaaaggaaa
ataaaagttattccgcctaatatcaatacaagttttagcgggtttacattaactgaaaat
aatattttatttggcttcaattcaatcaaaggattaagacgagatatgattgttgaaatg
attcaaaatcgaaaaagcgatggaaaatatttaggattgattgattttctcaaaagattg
gataaaaaatggttaaagccagaatacattaagccattaatctacgcaggggcattcgac
caatttgattactctagaggcgctttattagcatcggttgatggaattgttcaaagcata
aaaatgagcggaaacaatattgatttatttgaattattaaaacctaaatatgaatttgct
ccagatttaacgcttgaagaaaaactagaaacagaagaacaatacttaggcacatatttg
tcaggtcatccaactgaaaagtatgatcaattgagacaatggaaacaagttgagtatacg
agcgaactgaccattggaaaaacaagtagaattattgggatggtaaaaaatgtgcataaa
atccgcactaaaaaaggtgagtccatggctttcgtaacaattagtgatacttctggagat
tgctcgctcacgcttttcccgacaaaatatcgtcaatttattgactttcttaataacggg
actattttatacgtttctgggaaagttgattcaaaacgagaagatactcctcaaatgatt
gtcggtcaaatggaaaatgttgagaaagtaatggacagttacaccactaaaaaatgtttt
atacggatactagatgtgcagaacaccaacgagacattggaaaaaatgaaaaaaataatg
atgaaggcaaaaggcaatataccggtcgttctctattatgtacaaacaaataaaaaaatt
gttttagcagaagaaaattggatccatgatacacccgaattaatagaacaattggaagaa
ttactcgggaaagaaaatgttgtgatcaaaaatagttaa
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