Carnobacterium sp. 17-4: CAR_c12530
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Entry
CAR_c12530 CDS
T01452
Symbol
topA1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
crn
Carnobacterium sp. 17-4
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crn03032
]
CAR_c12530 (topA1)
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c12530 (topA1)
Enzymes [BR:
crn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CAR_c12530 (topA1)
DNA replication proteins [BR:
crn03032
]
Prokaryotic type
DNA Topoisomerases
CAR_c12530 (topA1)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CAR_c12530 (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Zn_ribbon_RPB9
Zn_ribbon_recom
HypA
Motif
Other DBs
NCBI-ProteinID:
AEB29945
UniProt:
F4BRM5
LinkDB
All DBs
Position
complement(1299850..1301463)
Genome browser
AA seq
537 aa
AA seq
DB search
MEKVKKGLSAGRVQSVALKLICEREDEINRFEPEEYWSIGANFKKDKKKFKANFYGLKGK
KQALSNAEDVQKIIKELDGDQFEVMSVTKKERLRNPALPFKTSSLQQEAARKLNFRTRKT
MMVAQQLYEGISLGRGGAVGLITYMRTDSTRIALSAKNEAAEYIIKEFGPEYAASKPRIG
KKAEGDQDAHEGIRPSSVLRTPKEVEKYLTKDQYKLYNLIWSRLVASQMTPAVFDTMKVD
IAQKDVYFRANGSKVKFPGYQKVYIEGNDEGKEEKDNLLPEMEKGDKVKSIDIEPKQHFT
QPPARFSESTLIRVLEDNGVGRPSTYAPTLETIQRRYYVKLQNKRFEVTELGGIVNGLIN
EFFPQIVDVHFTADMEKNLDEVEEGNKEWEKVIDQFYQPFAVEVEKAEENMEKVQIKDEP
AGFDCELCGHPMVIKLGRYGKFYACSNFPDCRNTKPIVKEIGVACPVCGEGHVIERKSKK
NRIFYGCDRYPTCEFVSWDKPVGRSCPKCEHYLVEKKAKGSKQVICSNCDYKEEVQK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaagttaaaaaaggtttaagtgcagggagagtacaatctgtagcgttaaagctg
atttgtgaacgagaagatgaaatcaatcgatttgaaccggaagagtattggtcaatcggt
gctaatttcaaaaaagataagaaaaaattcaaagctaatttttatggtttaaaaggaaaa
aaacaagccttgagcaatgctgaagatgtccaaaaaattattaaagaattggatggcgat
cagttcgaagtcatgtcagttacgaaaaaggaacggttaagaaatccggcgcttccgttt
aagacaagtagtttgcaacaagaagccgcaagaaaattaaattttagaacacgtaaaaca
atgatggttgctcaacaactttatgaaggaatttcgttaggccgtggtggggctgtcggt
ttgattacgtatatgcgtaccgattccaccagaatcgctctttcggctaaaaatgaagcc
gcggaatacattatcaaagaatttggaccagaatacgcagcatctaaacctcgaattgga
aaaaaagctgaaggcgaccaagatgctcatgaaggtattcgtccttccagcgtgttacgg
acaccaaaagaagttgaaaagtatctgacaaaagaccagtataaattgtataatctgatt
tggtcacgattggtagccagtcaaatgacacctgctgtatttgataccatgaaggtcgat
attgctcaaaaagatgtttactttagagcgaatgggtctaaagtgaaatttcctggttat
caaaaagtctatattgaaggcaatgatgaaggtaaagaagaaaaagataacttgctacca
gagatggaaaaaggcgataaagttaagtcgatcgatatcgagccaaaacaacatttcact
caaccacctgctcgcttctctgaatcgacattgattcgtgtgctggaagataacggtgta
ggtcgtccttctacgtatgctccaacattggaaaccattcaacgtaggtattatgttaaa
ctccaaaacaaacgttttgaagtaaccgaactgggggggattgtgaatgggcttattaat
gagttcttccctcagatcgtggatgttcactttactgcagatatggaaaaaaatctggat
gaagtcgaagaaggcaataaagaatgggaaaaagttattgatcaattctatcaaccattt
gctgtggaagtcgaaaaagcagaagagaatatggaaaaagttcagatcaaagatgagcca
gccggatttgactgtgagctttgcggacatccaatggtgattaagttgggtcgttatgga
aaattttatgcatgcagtaattttccggattgccgtaacactaaacccattgtgaaagaa
ataggtgtagcttgtccagtatgtggtgaagggcatgtaattgaacggaaatcaaagaaa
aatcgtattttttatggctgtgaccgttacccaacatgcgaatttgtatcatgggataaa
ccagttggacgcagctgtccgaaatgcgaacattatttagtagagaaaaaagcaaaaggc
agcaagcaagtcatctgcagcaattgtgattataaagaagaagtccaaaaataa
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