Carnobacterium sp. 17-4: CAR_c13330
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Entry
CAR_c13330 CDS
T01452
Symbol
cshB
Name
(GenBank) ATP-dependent RNA helicase; cold shock
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
crn
Carnobacterium sp. 17-4
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crn03019
]
CAR_c13330 (cshB)
03009 Ribosome biogenesis [BR:
crn03009
]
CAR_c13330 (cshB)
Enzymes [BR:
crn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAR_c13330 (cshB)
Messenger RNA biogenesis [BR:
crn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAR_c13330 (cshB)
Ribosome biogenesis [BR:
crn03009
]
Prokaryotic type
rRNA helicases
CAR_c13330 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NAT10_TcmA_helicase
AAA_22
Microtub_bd
PhoH
P-loop_SecA
SWI2_SNF2
LicP_NPro
Motif
Other DBs
NCBI-ProteinID:
AEB30024
LinkDB
All DBs
Position
complement(1374940..1376295)
Genome browser
AA seq
451 aa
AA seq
DB search
MEHTFEKFGLQPFLIDAINEIGFTKPTEVQEKLIPAIKSGKSVIGQSQTGSGKTHTFLLP
LINKIDPSRKEVQVVITTPSRELAEQIYQAALQLVEKAPAKIIVQNFVGGTDKKRQITKL
AGTQPHIVIGTPGRILDLVTEKALLIYTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKL
QMLVFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTIENWLISTKGKDRIDVIYELLT
IGQPYLVMIFANTKSKVDELADGLKSRGIKVAKIHGDIPPRERKRVMKQVQNLEYQFVVA
TDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLIIDIE
KLGIPFEPKMIQKGEIVDTYDRKRRTTRENTATDKIDPKLKSMISQTKKKVKPGYKKKMS
RAIKESGLKQRRVERRSQANAIKKSKQEKII
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggaacatacctttgaaaagtttgggttacaaccctttttaattgacgcaataaatgaa
attggttttacaaagccaacagaagtacaagaaaagcttataccagctattaaaagtggg
aaaagtgttattggtcaatcacaaacggggtcaggaaaaactcatacatttttacttcca
ttaataaacaaaattgatccatcacgtaaagaagtgcaagtggtgatcactactcctagt
agagaactagcagaacaaatatatcaagcagcacttcaattagttgaaaaagctcctgca
aaaattattgtacaaaattttgtaggtggaacagataaaaaacgacaaataactaaatta
gctggaactcaaccacatattgtaatcggaacacctgggagaattttagatttagtaact
gaaaaagctttattgatttatacgtctccagtcttggttattgacgaagcagatatgact
ttagatatgggatttttaacggatgttgatcaaatcgcaagtaaattacctgaaaagttg
caaatgcttgtcttctcagcaactatcccgattaagttacaaccgtttttgaaaaaatat
atgtctaatccgttatttgaacaaattcagcctaaagcaattatttcaccaacgattgaa
aattggcttatttctacaaaagggaaagacagaattgatgttatttatgaattattaacg
attggacaaccgtatttggttatgattttcgcaaatacgaaatctaaagtcgatgaatta
gcggatggtcttaaatctagagggattaaagtagctaaaattcatggagatattcctcca
cgtgaaagaaaacgtgtaatgaaacaagtacaaaatcttgagtatcaatttgtcgttgcg
actgatttagctgcacgcggtattgatattgaaggtgtttcacatgtgatcaatgctgag
attccaagagaccttagcttctttattcatcgtgttggtagaactggaagaaacaatctt
aaaggaactgccatcactttgtatgctccaagcgatgaaaacttaatcatagacattgaa
aaattagggattccttttgaaccaaaaatgattcaaaaaggtgaaatagtagacacgtat
gatcgtaagcgtcgtacgactcgtgaaaacacggctactgataaaattgatcctaaattg
aagagtatgataagtcagacaaagaaaaaagttaaaccaggatacaagaaaaaaatgtct
cgtgccattaaagagagtggtttgaaacagcgtcgtgttgaacgtcgtagtcaagctaat
gctattaaaaaaagcaaacaagaaaaaataatttaa
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