Carnobacterium sp. 17-4: CAR_c16410
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Entry
CAR_c16410 CDS
T01452
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03420
Nucleotide excision repair
crn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAR_c16410 (pcrA)
03430 Mismatch repair
CAR_c16410 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c16410 (pcrA)
Enzymes [BR:
crn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAR_c16410 (pcrA)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAR_c16410 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
CAR_c16410 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
DUF6175
Terminase_6N
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AEB30299
LinkDB
All DBs
Position
complement(1702481..1704727)
Genome browser
AA seq
748 aa
AA seq
DB search
MVLRDDLLNGMNPKQKDAVVCTKGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILA
ITFTNKAAKEMKERVTRLMKEGGSDVWVSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQ
QTLMKRILKERNIDPKKYNPRAILGEISNAKNELDTPVDYRKRAGSFFEKIVADCYDDYQ
RELRRNQAVDFDDLIMLAIRLFKESPETLDYYQNKFHYIHVDEYQDTNEAQYTLVNMLAE
RFKNLCVVGDADQSIYGWRGANMENILNFEKDYPDATTVLLEQNYRSTKFILQAANDVIG
NNSKRKVKKLWTDNHDGEKITYYRGQSEGDESRYVISKIQEEMKENNYNYGDFAVLYRTN
AQSRVIEDSLLKSNIPYKMVGGHKFYDRKEIRDVLAYLRLIANPDDNMSFERVVNVPKRG
IGPGTIEKLRTSSNQYDWSLLETALNVSITPISGKAASELEGFGFMMKDLRQMQEYVPVT
ELVEEVLKRSGYQKSLELERTLESETRLENIQEFLTVTQQFEKENTEDKSLLTFLTDLAL
VSDLDNLEEEPQSEVTLMTLHAAKGLEFPIVFLIGLEEGIFPLSRSMMEEDQLEEERRLA
YVGITRAEKKLYITNAYSRVLYGRTQSNSASRFINEITDEVLELGNQQNLNTPFSRSTFS
STTSPMQRNQATRAASQPYKAPVTSKTSSGADKLGWNVGDKAVHKKWGLGTVVKVTGAAN
DLQLDIAFKEQGIKRLLAAFAPIEKQDA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttggtattacgagatgacttattaaatgggatgaatcccaaacaaaaagatgcagttgta
tgcacaaaaggacctcttttaattatggctggagcaggaagcggaaaaacacgtgtctta
acacaccgtattgcctatttgatcgaagaaaaaaacgttaatccatggaatattttggcg
attacatttacgaataaagccgctaaagaaatgaaagaacgagtaacccgtctaatgaaa
gaagggggaagcgatgtttgggtctctacttttcactcaatgtgtgtccgtattttacgt
cgcgacatcgatcgcatcggttatactaaagcatttactatcagcgatccaagtgaacag
caaacattgatgaaacgaatcctaaaagaacgaaatatcgatcctaaaaagtataatcca
agagctatcttaggagaaatcagcaatgctaaaaatgaattagatacaccagttgactac
cgtaaaagagctggaagcttttttgaaaaaatagtggcagattgttacgatgattaccaa
agagaattgcgtcgcaatcaagcagtcgattttgacgatttgattatgttggctattcga
ttattcaaagaaagtcctgaaacactggattattaccaaaataaatttcactacatccat
gtcgatgaataccaagatacaaatgaagcacaatacactttagtaaacatgctagctgaa
agatttaaaaatctctgtgttgttggggatgctgaccaaagtatctacggctggcgcgga
gccaacatggaaaatatcttgaattttgaaaaagattatccagatgcaacgactgttttg
ttagaacaaaattaccgttcgactaaatttatattgcaagctgccaatgatgtgatcgga
aataactcaaaacgtaaagtcaaaaaactttggacagataatcatgatggtgaaaaaatc
acgtattatcgtggacaatctgaaggtgatgaatcacgttacgtcatttctaagattcaa
gaagaaatgaaagaaaataattacaattatggtgattttgcagttctttaccgtacaaat
gctcagtctcgtgttattgaggatagcttgttaaaatcaaatattccttataaaatggtt
ggtggtcacaagttctacgaccgtaaagaaatcagagacgttttagcgtatctgcgttta
attgctaaccctgatgacaatatgagttttgaacgagtggtcaatgtacctaaacgaggg
attggtcctggaacgattgaaaagcttagaacttcttccaatcaatacgactggtctctt
ttggaaacggctttgaatgtgtctattacaccgatttccggcaaagctgctagtgaactt
gaaggatttggcttcatgatgaaagatttgcgtcaaatgcaagaatacgttccggtgacg
gaattagtcgaagaagttttaaaacgtagcggttaccaaaaatctttagaattagaacgc
acacttgaatctgaaacacgactagaaaatattcaagaatttttgacggtaacacaacaa
tttgaaaaagaaaatacggaagataaatcattgttgacgtttttaacggatctagcactg
gtttctgatttggacaatttagaagaagaacctcaaagcgaagtaactttaatgacgctt
cacgcagccaaaggattagagttcccaattgttttccttattggattggaagaaggaatt
tttccgttgtcacgttcgatgatggaagaagatcaattagaagaagaacgccgtctagct
tatgtaggaatcacacgtgcagagaaaaaattatatattaccaatgcttattcaagggtt
ttatatggccgtacacaaagcaattcggcttctcgcttcatcaatgaaatcacggatgaa
gtcttagaactaggaaatcaacagaatctaaatacaccatttagccgttcaacattcagt
tcaacaactagtcctatgcaacgcaatcaagcaacaagagcagctagtcaaccttataag
gctccagtaacaagcaaaacgtcaagcggagctgacaaattaggttggaatgttggcgat
aaagccgttcataaaaaatggggtcttgggacagtagtcaaagttaccggtgcagcaaat
gacctccaacttgatatagcctttaaagaacaaggaatcaaacgcctactagcagccttc
gctccaatcgaaaaacaggatgcgtag
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