Carnobacterium sp. 17-4: CAR_c24530
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Entry
CAR_c24530 CDS
T01452
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAR_c24530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crn03021
]
CAR_c24530 (rpoC)
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c24530 (rpoC)
Enzymes [BR:
crn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAR_c24530 (rpoC)
Transcription machinery [BR:
crn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAR_c24530 (rpoC)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAR_c24530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEB31108
LinkDB
All DBs
Position
complement(2558272..2561865)
Genome browser
AA seq
1197 aa
AA seq
DB search
MQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPSKDWECSCGKYKRIR
YKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRALEEII
YFASYVVTEPGSTPLEKKQLLTEREYREKREQYGNEFNAEMGAEAVKQLLNDVKLDQEVE
ELKEVLKTTTGQKRTRAIRRLDILEAFRNSGNQPSWMVMDVVPIIPPEIRPMVQLEGGRF
ATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKQMAIELFKPF
VMKELVERDIASNIKNAKRKIDRQDDAIWPILEEVIREHPVLLNRAPTLHRLGIQAFEPV
LVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSDEAQAEARMLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTMEEEGREGEGMQFSSLNEAMLAYQSGYVHLHSRIAIKPTDIPNKPF
TEWQNEKLMITTVGKLIFNDIMPNEFPYMNEPTQSNLEVQTPDSYFVEPGTDILAHIQAQ
ELVKPFKKKNLGNIIAEVFKRFKITETSKMLDRMKDLGYKYSTKAGITVGISDIVVLEEK
QEILDNAHIQVDKVMKQFRRGLITDEERYERVIDIWNKTKDHIQIKLMESLNDLNPIFMM
SDSGARGNISNFTQLAGMRGLMAAPNGQIMELPVTSNFREGLSVLEMFISTHGARKGMTD
TALKTADSGYLTRRLVDVAQDVIIRETDCGSDRGLVIQAIKEGNEVIEPLEERLLGRYTR
KTIFNPEDGTLIIGENQIITEDIAREIIAVGIEEVTIRSVFTCNTKHGVCKHCYGRNLAT
GSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARHPKGQA
VITEVTGEVVSIDENPAARTKEVTIKGETDTRSYQVPFSARMKVEEGDIIHRGEALDQGS
IDPKELLRVRDVLAVENYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVRVMDPGETDI
LPGTLIDIHDYTDKNFDTLVSGGIPATARPVLLGITKASLETNSFLSAASFQETTRVLTD
AAIRGKRDPLLGLKENVIIGKVIPAGTGMAKYRKMKPKGVGVVSENVYSINDQVEPK
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattggtttggcttctccagataaaatccgtagttggtcttatggtgaagtaaaa
aaacctgaaaccattaactaccgtaccttgaaacctgaacgtgatggtttgttctgtgaa
cgtatttttggtccttcaaaagactgggaatgttcttgtggaaaatacaaacgtattcgt
tataaaggaattgtttgtgaccgttgtggagtagaagttacacgctcaaaagtacgtcgt
gaacgtatgggccatattgaattagcggcaccagtttctcatatttggtacttcaaaggt
attccaagtcgtatgggtcttgtattagatatgagtcctcgtgctcttgaagaaatcatt
tacttcgcttcatatgtagtaactgaaccaggaagtacaccattagaaaagaaacaatta
ttaactgaaagagagtaccgtgaaaaacgcgaacaatacggcaatgaatttaatgccgaa
atgggagcagaagcggttaaacaactcttgaatgatgttaaattggatcaagaagtggaa
gaattaaaagaagtcttaaaaacaactaccggtcaaaaacggacacgtgcgattcgtcgt
ttagacattttagaagcattccgtaattctggtaaccaaccttcatggatggttatggat
gttgttcctattattccgccagaaattcgcccaatggttcaattagaaggtggccgtttc
gctacaagtgatttaaatgacttgtaccgtcgtgtaatcaaccgtaacaaccgtttgaaa
cgtttattagatttaaatgcgcctaatattattgtgcaaaatgaaaaacgtatgcttcaa
gaagcagtagatgcattgatcgataatggtcgtcgtggccgtccagttactggaccaggt
aaccgtccgttgaaatcattgtcacacatgcttaaagggaaacaaggtcgtttccgtcaa
aacttactaggtaaacgtgtcgattattcaggacgttcagttatcgttgttggaccattc
ttgaaaatgtaccaatgtggtttaccaaaacaaatggctattgaattgttcaaaccgttt
gtaatgaaagaattagttgaacgcgacatcgcaagcaatattaaaaatgctaaacgtaaa
attgatcgtcaagatgacgctatttggccaattttagaagaagtgattcgtgaacatcca
gtattattgaaccgagcacctactttacacagattagggattcaagcatttgaacctgtt
cttgttgaaggtaaagctatccgtcttcacccattagtgtgtgaagcttataatgccgat
ttcgatggtgaccaaatggctgtccatgtaccgttaagtgacgaagcgcaagctgaagca
cgtatgttgatgctggctgcacaaaacatcttgaatccaaaagatggtaaaccagttgta
acaccttctcaagatatggtcttaggtaactactacctgactatggaagaagaaggacgt
gaaggagaaggaatgcaatttagtagtttgaatgaggctatgcttgcttaccaaagcgga
tacgttcatttgcactctagaatcgcaatcaaaccaaccgacattccaaacaaaccattt
actgaatggcaaaacgagaagttaatgatcacgactgttggtaaattgatctttaacgat
atcatgccgaatgaattcccgtacatgaatgaaccaacacaaagcaacttggaagttcaa
actccagacagctattttgttgagccgggtacagacattcttgcacatattcaagcgcaa
gaattagttaaaccattcaagaagaaaaatcttggaaatatcattgctgaagtattcaaa
cgattcaaaattactgaaacgtctaaaatgctagacagaatgaaagatctaggatacaaa
tattctactaaagctggtattacagttgggatttccgatatcgtagtactagaagaaaaa
caagaaattctagataatgctcacatacaagttgataaagtaatgaaacaattccgtcgt
ggtttaattacggatgaagaacgttatgaacgtgttatcgatatctggaacaaaacaaaa
gatcacattcaaatcaagttaatggaaagtttgaatgaccttaacccaatctttatgatg
agtgactcaggtgcccgtgggaatatttccaactttactcagcttgctggtatgcgtgga
ttgatggctgcaccgaatggtcaaatcatggaattgccggttacttctaacttccgtgaa
ggattgtctgtattagaaatgtttatctctacccatggagctcgtaaagggatgaccgat
acagccttgaaaacagctgactcaggttacttgactcgtcgtttagttgacgttgcgcaa
gatgttatcattcgtgaaacagactgtggttctgaccgtggactagtgattcaagcaatc
aaagaaggaaacgaagttattgaaccacttgaagaacgcctattaggacgttacactcgt
aaaacaatctttaaccctgaagatggaacattgatcattggtgaaaaccaaattattact
gaagacattgccagagaaattattgctgttggtatcgaagaagtaacgattcgttccgtg
tttacatgtaatactaaacatggtgtatgtaaacattgttatggccgtaacttagcaaca
ggttctgaagttgaagttggagaagcagttgggacaattgccgctcaatcaatcggagaa
cccggtactcaattaacaatgcgtacgttccatacaggtggggttgccggagatgacatc
actcaagggcttcctcgtatccaagaaatttttgaagctcgtcaccctaaaggtcaagct
gtgattactgaagttactggggaagtcgtatcgatcgatgaaaatccagcagctcgtacg
aaagaagttacgatcaagggagaaacagatactcgttcttatcaagttccattttctgca
cgtatgaaagtagaagaaggagatattatccaccgtggtgaagcattagaccaaggttca
attgatcctaaagaattgttacgtgttcgtgatgtgcttgcagttgagaactacttgtta
cgtgaagtgcaaaaagtataccgtatgcaaggggtagaaatcggcgacaaacatatcgaa
gttatggtacgtcaaatgctacgtaaagtacgcgtaatggatccaggtgaaacagatatt
ttaccaggtacattaattgacattcatgactatacagataaaaactttgatacattggta
tctggcggaattcctgctacagcacgtcctgtattgcttggaattacaaaagcttccctt
gaaacaaatagtttcttatctgctgcatcattccaagaaacaacacgtgtcttaacagat
gctgcgattcgcggaaaacgtgatcctttattaggattgaaagaaaatgttattatcggt
aaagtgattccagctggtactggaatggctaaatatcgtaaaatgaaacctaaaggcgtt
ggcgttgtaagtgaaaatgtttacagcatcaatgatcaagtggaacctaaataa
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