Citrobacter rodentium: ROD_00641
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Entry
ROD_00641 CDS
T01145
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cro03021
]
ROD_00641 (rapA)
Transcription machinery [BR:
cro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ROD_00641 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CBG86845
UniProt:
D2TGG3
LinkDB
All DBs
Position
complement(75095..78001)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITNHEGWQLHVEEVKEENGLLAYIGTRLDTEENGVMLREVLLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFETEQLVICSLDFARRNKQRLEHLCEAEWDLLVVDEAHHLVWSVDAPSREYQAIE
QLAEHIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFTQFVEEQKNYRPVADAVAMLL
AGNKLSNEELNMLGELIGEQDIEPLLQAANSDRDGAQSAREELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSVYHNLIGYLAAPEEA
DGFDELIKACREQHEALKAQLEQGRDRLLEIHSNGGEKAQKLAESIEEQDDDTSLIAFAM
NLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELVYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIEKSAR
ALIEAARNEADEKLSAELSRLEALRAVNPNIRDDELAAIESNRQQVLESLSQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggataagcgatacagaaagcgaactgggacttgga
accgttgtcgccatggatgcgcgaaccgtcaccctgcttttcccttctaccggcgaaaac
cgtctgtatgcgcgcagtgactcccccgtgacccgcgtgatgttcaatcctggcgatacc
attaccaaccatgaaggctggcagctgcatgtcgaggaagtaaaagaagagaacggcctg
cttgcctacatcggcacccgtctcgacacggaagagaacggcgtaatgctgcgcgaagta
ttgctcgacagtaagctagtgttcagcaaaccccaggatcgtctgtttgccgggcaaatc
gaccgtatggaccggttcgccctgcgctaccgcgcgcgtaaatttcagagcgagcagtac
cgtatgccgtggagcgggctacgcggacagcgcaccagcctgatcccgcaccagctcaat
atcgcgcatgacgtcggccgacgccatgcgccgcgcgttctgctggcggacgaagtgggt
ctgggtaaaaccattgaagccgggatgatccttcatcagcagcttctctccggcgcggcg
gaacgcgtcctgattattgtgccggaaaccttacagcaccagtggctggtggagatgctg
cgtcgcttcaatctgcgcttcgccctgttcgacgacgagcgttacgccgaagcgcagcac
gacgcctacaacccgtttgaaactgaacagctggttatctgctcgctggatttcgcccgt
cgcaacaagcagcgtctcgaacacctgtgtgaagccgaatgggatctgctggtcgttgac
gaagcgcaccacctggtgtggagcgtggatgcgccgagccgcgaataccaggcgattgaa
caactggcggaacatatccccggcgtcctgctgctcaccgcaacgccggaacagctgggt
atggaaagccactttgcccgtctgcgtttgctcgatcctgaccgcttccacgatttcacc
cagtttgtcgaagagcaaaaaaactatcgtccggtcgccgacgccgtcgccatgctgctg
gcaggcaacaagctcagtaacgaagagctgaatatgctgggcgagctgattggcgagcag
gatatcgaaccgctgctgcaagccgccaatagcgatcgcgacggcgcgcagagcgcccgc
gaggagctggtctctatgctgatggaccgccacggcaccagccgcgtgctgttccgtaat
acccgtaacggcgtcaaaggcttcccgaagcgcgaactgcacaccattaagctgccgctg
ccgacgcagtatcagacggcgattaaggtgtccggcattatgggcgcgcgtaaaagcgcg
gaggaccgagcgcgcgatatgctctacccggaacagatctatcaggagttcgaaggcgat
agcggcacctggtggaacttcgacccgcgcgtggagtggctgatgggctatctgaccagc
catcgctcgcagaaggtgctggtgatctgcgcgaaggccacgaccgcccttcagcttgag
caggtgctgcgcgaacgtgaagggatccgcgccgccgtgttccacgaaggcatgtcgatt
atcgagcgcgaccgcgccgccgcctggttcggcgaagaagacagcggcgcgcaggtgctg
ctgtgctcggagatcggctctgagggccgcaacttccagttcgccagcaacctggtgatg
tttgacctgccgttcaacccggacctgctggagcagcgaattggtcgtctcgaccgcatc
ggtcaggcgcacgatattcagattcatgtgccttatctggaaaaaaccgctcagtcagtg
ctggtgcgctggtatcacgaagggctggacgcgtttgaacatacctgcccgaccggtcgc
gccatctacgattcggtctaccacaatctgattggttatctggcggcgccggaagaagcc
gacggttttgacgaactgatcaaagcctgccgcgaacagcatgaagcgctgaaagcgcag
ctggaacaggggcgcgaccgcctgctggagatccactccaacggcggcgaaaaagcgcag
aagctggcggaaagcatcgaagagcaggatgacgacaccagtctgatcgccttcgccatg
aacctgtttgatattgtcggcattaaccaggacgatcgcggcgagaatttaatcgtgctg
acgccatcagaccacatgctggtgccggattttccgggcctgccggaagacggctgcacc
attacctttgaacgtgacgtcgcgctgtcgcgggaagacgctcagtttattacctgggaa
catccgctgattcgtaacgggctggatctgatcctctccggcgataccggcagcagcacc
atttccctgctgaagaataaagccctgccggtcggcacgctgctactggaactggtatat
gtggtggaagcgcaggcgccgaagcaattgcagcttaaccgcttcctgccgccgacgccg
gtgcgtatgctgctggataaaaatggcaacaacctcgccgcccaggtggagtttgaaacc
tttaaccgccagctgagcgccgttaaccgccacaccggcagcaaactggttaacgccgta
cagcaggatgttcacgcgattctgcaacagggcgaagcgcagattgagaaatccgcccgc
gcgctgattgaggcggcgcgtaatgaggccgatgaaaaattgtcagccgaactgtcgcgt
ctggaagcgctgcgcgccgttaacccgaatatccgcgatgacgaactcgcagcgattgag
agcaatcgtcagcaggtgctggaaagcctgagccaggccggatggcgtctggatgcgttg
cgtctgattgtcgtcacgcatcagtaa
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