Citrobacter rodentium: ROD_01511
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Entry
ROD_01511 CDS
T01145
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cro03016
]
ROD_01511 (ligT)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
ROD_01511 (ligT)
Transfer RNA biogenesis [BR:
cro03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
ROD_01511 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
CBG86931
UniProt:
D2TI35
LinkDB
All DBs
Position
complement(177526..178056)
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AA seq
176 aa
AA seq
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MSEPKRLFFAIELPADVREQIVAWRAAHFPGEAGRPVAADNLHLTLAFLGEVSADKQKAL
AALAGRIRQPGFTLTLDDAGQWLRSRVVWLGTRRSPRGLLQLADMLRAQAARSGCYQSPR
PFHPHITLLRDASHAVALPPPGFCWSFPVSEFVLYASSFTRGRTRYTPLQRWTLVK
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagccgaaacggctgtttttcgccattgaactgcccgccgacgtgcgcgagcaa
attgtcgcatggcgcgcggcgcacttccctggggaagcgggccgtcctgtcgctgccgac
aatctgcatttgacgctggcgtttttaggcgaagtgagcgccgacaaacaaaaggcgtta
gccgcgctggccggacgcatccgccagcccggatttacgctcacgctggacgatgccggg
caatggctgcgctcgcgggtagtctggctcggcacgcgccggtcgccgcgcggcctgctg
caactggccgatatgctgcgcgcccaggcggcgcgcagcggctgctaccagagcccgcgg
ccatttcatccgcacattacgctgctgcgcgacgccagccacgcggtggcgctcccgccg
cccggcttttgctggtcgtttccggtgagcgaatttgtgctctacgcctcctcatttacg
cgaggtcgcacccgttacacgccgttacagcgctggacgcttgtcaaataa
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