Citrobacter rodentium: ROD_11461
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Entry
ROD_11461 CDS
T01145
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cro
Citrobacter rodentium
Pathway
cro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROD_11461 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_11461 (rne)
03009 Ribosome biogenesis [BR:
cro03009
]
ROD_11461 (rne)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ROD_11461 (rne)
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROD_11461 (rne)
Ribosome biogenesis [BR:
cro03009
]
Prokaryotic type
rRNA processing factors
ROD_11461 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CBG87913
UniProt:
D2TTR9
LinkDB
All DBs
Position
complement(1237054..1240284)
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PEPAEPVVKAAAPKAAAAPAAPAEPGLLSRLFGALKSLFSGGEEAKPAEQPAPKAAEKPE
RQQDRRKRQNNRRDRNDRNERSERRDSRDNRSERAESGESRDENRRNRRQAQQSADRDNR
QQTAEVAEKAKSGDEQQPQPRRERNRRRSEEKRQAQQEVKALSIDEQQTQDTEQEERVRP
AQPRRKQRQLAQKVRYTDNAADSEVVVAQVSEEKVATPVAEESAPVQSTELAKVPLPVVA
EAPQEQEESSEARDSAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPE
MASGKVWIRYPVARPQDAEQREQEIEQVQAQPVAAEPQAVVAAVEVAETVVETVAQQAPV
QPEETIETTHPEVIAAPVDEQPQVIAEADVPVAEEVAAEAQPVVAAEESAPVAEETAEVV
TVEPEVAVEPVAVEPEVVAEPVKEQDVVEEVVAPAPVAAPVETVKVEKPVAVTPLAEHSH
ATAPMTRAPAPEYVPEAPRHSEWQRPAFVFEGKGAAGGHSATHHASAAPTRPQPVE
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgtgttgcccttgtagat
gggcagcgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagcggcttttgttgattac
ggcgccgaacgtcacggtttcctcccgctaaaagaaatcgcccgcgaatatttccccgct
agctacaacgcgcatggtcgacccaacatcaaagatgtgttgcgtgaaggtcaggaagtt
attgtccagatcgataaagaagaacgcggcaataaaggcgccgcgctgaccacctttatc
agcctggcgggcagctacctggtgctgatgcccaacaacccgcgcgcgggcggcatctcc
cgtcgtatcgaaggcgacgatcgcaccgaactgaaagaagcgctggccagtcttgagctg
cctgaaggcatggggcttatcgtgcgcaccgcgggcgtcggcaaatcggccgaagcgctg
cagtgggacttaagctttcgcctgaaacactgggaagcgattcagaaagcggcggaaagc
cgtcctgccccgttcctgatccatcaggagagcaacgtcatcgttcgcgccttccgcgac
tatctgcgtcaggatattggtgaaatcctcatcgataacccgaaagtcatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaattaaactgtatacc
ggtgaaattccgctgttcagccactatcagatcgagtcacagattgaatccgcgttccag
cgtgaagtgcgcctgccctccggcggctccattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcacgcgctacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagccgctgatgagatcgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgactttatcgacatgacgccggttcgtcaccagcgcgcggtggaa
aaccgtctgcgtgaggcggtgcgtcaggacagagcgcgcattcagatcagccacatttcc
cgcttcggcctgctggagatgtcccgccagcgcctgagcccgtcgcttggcgagtccagc
catcacgtctgcccgcgctgtagcggcaccggcaccgttcgtgacaacgaatcactgtcg
ctgtccattctgcgcctgatcgaagaagaagcgctgaaagagaacacccaggaggtccat
gcgatcgtgcctgtgccgattgcctcttacctgctgaacgaaaaacgcaccgccgtcaac
gccattgaaacccgccagaacggcgtgcgctgcgtcatcgtaccaaacgatcaaatggaa
acgccgcactactccgtgctgcgcgtccgcaaaggtgaagagacgccaaccctgagctac
atgctgccgaagctgcatgaagaagcaatggcgctgccttctgaagaagagtacgccgaa
cgcaaacgtcctgaacaaccggcgcttgccacctttgccatgccagacgttccgccagcg
ccagagcctgccgaaccggtggtgaaagcggccgcgccgaaagccgccgccgcgccagcc
gcccctgctgagccgggcctgttaagccgtctctttggcgcgctgaaatcgctgttcagc
ggtggcgaagaggccaaacctgccgagcagcctgcgccgaaagcggcggaaaaaccggaa
cgccagcaggatcgccgtaagcgtcagaacaaccgccgcgatcgcaatgaccgtaacgag
cgcagcgagcgtcgtgacagccgcgataaccgtagcgaacgtgctgaaagcggtgaaagc
cgtgatgaaaatcgccgtaaccgccgacaggcgcagcagagcgccgatcgcgacaaccgc
cagcagactgctgaggtagcagagaaagcgaagtccggcgacgagcagcagccacagccg
cgtcgcgagcgcaatcgtcgccgtagcgaagaaaaacgtcaggcgcagcaggaagtaaaa
gcgctgagtattgacgagcagcagacgcaggacaccgagcaggaagagcgcgtacgtccg
gctcagccgcgccgtaaacagcgtcagctggcgcagaaagtgcgttacaccgataatgcg
gctgacagcgaagtcgtggttgcgcaagtgagcgaagaaaaagtggcgacgccggttgcc
gaagagtccgcacctgtgcagagcaccgagctggcgaaagttccgctgccggttgtcgct
gaagcgcctcaggagcaggaagagagcagcgaagcgcgtgacagcgccggtatgccgcgt
cgttcccgtcgttcaccgcgccatctgcgggtcagcggccagcgccgtcgtcgttatcgt
gacgagcgttacccgctccagtcgccgatgccgctgacggttgcctgcgcatcgccggaa
atggcctccggtaaagtgtggatccgttatccggtcgcacgtccgcaggatgcggagcag
cgtgagcaggagatcgaacaggtacaggcgcagccggttgcggcagagccgcaggccgtt
gtcgccgccgttgaagtggcggagacggtggttgaaaccgttgcgcagcaagcgccggtt
cagccggaagaaaccatcgaaacaacccatccggaagtgattgccgcgccggttgatgaa
cagccacaggtgattgctgaagcggatgtaccggtagctgaagaggtcgccgccgaagcg
cagccggtcgtcgccgccgaggaatccgctccggtggccgaagaaacggcggaagtggtg
acggttgagcctgaagtggctgtcgaaccggtagctgtcgaacctgaggtggttgccgaa
ccggtgaaagagcaggacgttgtggaagaggttgtggctcctgcgcctgttgccgccccg
gttgaaaccgttaaggtggaaaaaccggtcgccgtcacgccgctggccgaacacagccac
gctaccgcgccgatgacccgcgcgccagcgccggaatacgtgccggaagcgccgcgtcac
agcgagtggcagcgtcctgccttcgtctttgaaggtaaaggcgcggcaggcggacacagc
gccacgcaccacgcctctgccgctccgactcgcccgcagcctgtcgagtaa
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