Citrobacter rodentium: ROD_17131
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Entry
ROD_17131 CDS
T01145
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cro03016
]
ROD_17131 (rnb)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ROD_17131 (rnb)
Transfer RNA biogenesis [BR:
cro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ROD_17131 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
PilZ
OSR1_C
Motif
Other DBs
NCBI-ProteinID:
CBG88471
UniProt:
D2TKC8
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Position
1823708..1825642
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
IAVIHTDKDRESAEPEELVEPFLTRFVGRVQGKNDRLSVVPDHPLLKDAILCRAARGVTH
EFKEGDWAVAEMRRHPLKGDRSFYAELTQFITFGDDHFVPWWVTLARHNLEKEAPDGVAS
EMLDEGLARQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSK
LDKTAKLRAFTNYLPGFNIPMLPRELSDDLCSLRPHEVRPVLACRMTLAEDGAIEDDIVF
FAATIESKAKLAYDNVSDWLENSGDWQPASEDIARQIRLLQRICLSRGEWRHAHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHTGFD
PANTEALAALLKNHDVHVDPQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGENIARPQDDVTTQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQESGTVQIKGETVYKVTDVIDVTIAEVRMETRSVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgctagcgcagcttaaacagcaactgcattcccagacgccg
cgagctgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgcg
cagaaaagttacttcatcccgccgccgcaaatgaaaaaagtgatgcatggcgaccgggtt
atcgcagtgatccataccgacaaagaccgcgagtcagcggagccggaagaactggtagag
ccgttcctgacccgcttcgtggggagagttcagggcaaaaacgatcgcctgtctgtagtg
ccggatcatccgctgcttaaagacgccattctctgccgcgccgcgcgcggcgtcacgcat
gaatttaaagaaggcgactgggccgtcgcggaaatgcgccgtcatccgctgaaaggcgac
cgctccttctacgccgaattaacgcaatttattaccttcggcgacgatcactttgttccg
tggtgggtaacgctggcgcggcacaatctggaaaaagaggcgccggacggcgtggcgagc
gaaatgctggacgaaggtctggcgcgtcaggatctgaccgcgctcaattttgtcaccatt
gacagcgccagcaccgaagatatggatgatgcgctgtacgccgaagagctggccgacggc
agactgcaactgaccgtcgccattgccgacccgaccgcgtggatcgcggaaggcagcaaa
ctggataagacggcgaaacttcgcgcgttcaccaactacctgccgggattcaacatcccg
atgctgccacgcgaactgtcggacgacctgtgctcgctgcgtccgcatgaagtgcgcccg
gtgctcgcctgccgcatgacgcttgccgaagatggcgccattgaggatgatatcgttttc
tttgccgccacgattgagtcaaaagctaaactggcttacgacaatgtctctgactggctg
gaaaatagcggagactggcagccggcaagcgaagatatcgcccgccagatccgcctgctg
caacgcatttgcctgagccgcggcgagtggcgtcatgcccatgcgctggtctttaaagat
cgtccggactaccgcttcattcttggtgaaaaaggtgaagtgctggatatcgtcgctgag
ccgcgccgcattgccaaccgtatcgttgaagaggcgatgatcgccgccaatatctgcgcc
gcacgcgtcctgcgcgataagctgggctttggtatctacaacgtccataccggttttgat
ccggcgaacacggaagcgctggcggcgctgctgaaaaaccatgacgtgcatgtcgacccg
caggaagtactgacgctggaaggcttctgtaaactgcgccgcgaactggacgcacagccc
tccggcttccttgacagtcgcattcgccgcttccagtcctttgctgaaatcagcactgaa
ccgggcccgcactttggcctcggtctggaagcttacgccacctggacttcgccgattcgt
aagtacggcgatatgatcaaccatcgcctgctgaaagcggtgattaaaggtgaaaatatc
gcacgtccgcaggacgacgtgaccactcagatggcagagcgtcgccgcctgaaccgcatg
gcggaacgcgacgtcggtgactggctgtatgcccgcttcctgaaggataaagccggtacc
gatacccgtttcgccgctgaaatcattgatatcagccgcggcggaatgcgcgtgcgcctg
gtggataacggcgcggtcgcctttattccggcgccgttcctgcacgccgttcgcgacgaa
ctggtttgcagccaggaaagcggcaccgtgcagattaaaggtgaaacggtgtataaagtg
acggacgtcattgatgtcaccatcgccgaagtgcggatggaaacccgcagcgttatcgcc
cgtccggttgcctga
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