Citrobacter rodentium: ROD_22891
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Entry
ROD_22891 CDS
T01145
Symbol
nfo
Name
(GenBank) Probable endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
cro
Citrobacter rodentium
Pathway
cro03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ROD_22891 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_22891 (nfo)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
ROD_22891 (nfo)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
ROD_22891 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
CBG89037
UniProt:
D2TRJ0
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All DBs
Position
2403633..2404496
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AA seq
287 aa
AA seq
DB search
MKYIGAHLSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTAQIIDDFNAACEKYH
YTAAQILPHDSYLINLGHPVSEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLQQIPED
ECLAKIAESINIALSRTQGVTAVIENTAGQGSNLGFKFEQLAAIIDGVEDKSRVGVCIDT
CHAFAAGYDLRSAEQCEKTFAEFERIVGFQYLRGMHLNDAKSTFGSRVDRYHSLGEGNIG
HEAFRWIMQDPRFDGIPLILETINPDIWAEEIAWLKAQQTESAEALP
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatatcggagcacacctcagcgccgctggcggtctggcaaacgccgcgattcgc
gccgctgaaatcgacgcgacggccttcgcgctctttaccaaaaaccagcgccagtggcgt
gcggccccgcttaccgcgcaaatcattgatgacttcaacgccgcctgcgagaagtaccat
tacaccgccgcgcaaatcctgccgcacgacagctatctgattaacctcggccatccggtc
agcgaggcgctggaaaaatcccgcgatgcgtttattgatgaaatgcagcgctgcgagcag
ctcggtttgtcgctgctgaactttcatccgggcagccaccttcagcaaattcccgaagac
gaatgtctggcgaaaattgccgagtcgatcaatattgccctctcccgcacgcagggggtc
acggcggtcatagaaaataccgccggacagggcagcaatcttggtttcaagtttgaacag
ctcgcggcgatcatcgacggcgtggaagataaatcccgcgtcggagtctgcattgatacc
tgtcacgccttcgcggcgggctacgatttacgttctgctgaacagtgtgaaaaaacgttt
gccgaatttgaacgtatcgtcggctttcagtatctgcgtggaatgcaccttaacgatgcc
aaaagcacattcggcagccgcgttgaccgctatcacagcctgggggaaggcaatattggt
catgaggcgttccgctggattatgcaggacccgcgtttcgacggcattccgctgatcctc
gaaaccatcaatcccgatatctgggcggaagagatcgcctggctgaaagcgcagcagacc
gaatcggcggaagcgttaccatga
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