Citrobacter rodentium: ROD_25011
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Entry
ROD_25011 CDS
T01145
Name
(GenBank) putative lytic transglycosylase
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
ROD_25011
Enzymes [BR:
cro01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
ROD_25011
Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
ROD_25011
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Gene cluster
GFIT
Motif
Pfam:
SLT
SBP_bac_3
Lysozyme_like
Spuma_A9PTase
Motif
Other DBs
NCBI-ProteinID:
CBG89244
UniProt:
D2TU12
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Position
2639553..2641100
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AA seq
515 aa
AA seq
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MKKLKINYLFIGILTLLLAAALWPSIPWFGKADSRIAAIQARGELRVSTVSSPLTYSQLN
GKPYGLDYELAQQFANYLGVKLKVTVRQNISQLFDDLDNGNADLLASGLVYNSERVKNYQ
PGPTYYSVSQQLVYKVGQYRPRTLEKVSDSQLTIAPGHVAVNDLQTLKETKFPDLSWRID
KKKGTTELLNAVIAGKLDYTIADSVAISLYQRVHPELAVALDITDEQPVTWFSVLDNDNT
LSAALLDFFNSINEDGSLARLEEKYLGHGDDFDYVDTRTFLRAVDAMLPELKPLFEKYAQ
QIDWRLLAAIAWQESHWDPQATSPTGVRGMMMLTKNTAQSLGLTDRTDAEQSISGGARYL
QSMMSKLPESIPEDERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWSDVKQRLPLLSQ
KQYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQIAEALKLAQAYPVVSPDEF
DNATFPLSSFLSQASSHYLTHTSFLLFSPPQKEEE
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaattaaagattaattatctgttcatcggcatactgacgctactgctggccgct
gcgctttggccctcgattccctggttcggtaaagccgactcccgtatcgccgccattcag
gcgcggggagagctgcgcgtaagcacggtcagctcgccgctgacctactctcagctcaac
ggcaagccctatgggctggactatgaactggcgcagcagttcgcgaactatcttggcgta
aagctgaaggtgaccgtgcgccagaacatcagccagctgttcgacgatctcgataacggc
aacgccgacctgctcgcctccgggctggtctataacagcgagcgggtcaaaaactatcag
cctggccctacctactactccgtttcccagcagctggtttataaggtcggtcagtatcgt
ccgcgcacgctggagaaagtcagcgacagtcagctcactatcgcgcccggacatgtggcg
gtgaacgatttgcaaaccctgaaagagacaaagttccccgatctgagctggcggatcgat
aagaaaaaaggcaccaccgagctgctgaacgcggtgatcgccggcaaactggattacacc
attgccgattccgtcgccatcagcctctaccagcgcgtccatcccgaactggcggttgcg
ctggatatcactgacgaacagccggtcacctggtttagcgtgctggataatgacaacacc
ttatccgccgcgctgctcgatttctttaacagcatcaatgaagatggctcgctggcgcgg
ctggaggaaaaatacctggggcacggcgatgatttcgactatgtggacacccgcactttc
ctgcgcgcggtggacgccatgctgcccgagctgaaaccgctgtttgagaaatatgcccag
cagatcgactggcgactgctggcggcaatcgcctggcaggagtcgcactgggacccgcag
gccacctcgccgaccggcgtgcgcggcatgatgatgctgaccaaaaacaccgcgcagagc
ttagggctcaccgatcgcaccgatgccgaacagagcatcagcggcggcgcgcgctatttg
cagagtatgatgagcaaactaccggaaagtattccggaggatgaacgcatctggttcgct
ctggcggcttataacatgggctacgcgcatatgcttgacgcgcgggcgttgacggccaaa
accaaaggtaacccggacagctggagcgacgttaaacagcgcctgccgctgctcagtcag
aaacagtattacagcaagctgacctatggttacgcacgcggccacgaagcgtatgcctac
gtcgaaaatatccgtaaataccagatcagcctggtgggctatttgcaggaaaaagaaaag
cagatcgccgaggctctgaaactggcgcaggcttatccggtggtatcgccagacgagttc
gataacgcaacgtttcccctctcctctttcctgtctcaggcgtcatcgcactatctgacg
catacctctttcctgctgttttcgccgccgcagaaagaggaagaataa
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