Citrobacter rodentium: ROD_25231
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Entry
ROD_25231 CDS
T01145
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cro03009
]
ROD_25231 (srmB)
Enzymes [BR:
cro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROD_25231 (srmB)
Ribosome biogenesis [BR:
cro03009
]
Prokaryotic type
rRNA helicases
ROD_25231 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Shikimate_DH
DUF561
CMS1
Mov-10_helical
Motif
Other DBs
NCBI-ProteinID:
CBG89266
UniProt:
D2TU34
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All DBs
Position
2659539..2660873
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AA seq
444 aa
AA seq
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MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGEAIKDFAERLLEDPVEVSASPSTRERKKIHQWYYRADNYEHKFELLK
HLLKQDDATRTIVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLM
LKIGRYIEEPLKARVIDELRPTTRAPSEKMTGKPSKKVLAKRAEKKKEKQKDAPRVKKRH
RDTKNIGKRRKPSGTSVSPQSGEE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaacttgaactcgatgaaagcctactggacgccctccag
gataaaggcttcactcgcccgaccgccattcaggctgccgccattccgcctgccctcgac
ggccgtgatgtgctcggttctgcgccgacaggcaccggtaaaacggcggcatatctgctg
ccggcgttgcagcacctgctcgacttcccacgtaaaaaatccgggccgccgcgtattttg
atcctcacgccgacccgtgagctggcgatgcaggtggccgatcatgcccgcgaactggcg
aagcatacccatctggatatcgcgaccatcactggcggcgttgcgtacatgaaccacgcg
gaagtgttcagcgaaaaccaggatattgtagtcgccaccaccgggcgcctgttgcagtac
ataaaagaagagaactttgactgtcgcgcggttgaaacgctgatcctcgatgaagccgac
cggatgctcgatatgggcttcgctcaggatattgaacacattgccggtgaaacccgctgg
cgtaaacagaccatgctgttctccgcaacgctggaaggcgaggcgattaaagacttcgcc
gagcgcctgctggaagacccggtagaggtttccgccagcccctctacgcgggaacgcaag
aagatccaccagtggtattaccgtgcggataactacgaacataagttcgagctgctgaag
cacttactgaagcaggatgacgccacccgtaccatcgtgtttgttcgcaagcgcgagcgc
gtgcatgaactcgccgaacaactgcgtctggcggggatcagcaactgctatcttgagggg
gagatggcgcagatcaagcgtaacgaaggcattaagcgcctgaccgacggtcgcgtgaac
gtactggtcgcgaccgacgttgccgcccgcgggatcgacatcccggacgtcagtcacgtg
attaacttcgatatgccgcgcagcggggatacctatctgcaccgaattggccgtaccggc
cgcgccgggcgtaaaggcaccgccatctcgctggtcgaagcgcacgatcatctgctgatg
ttaaaaattgggcgttacatcgaggaaccgctgaaagcgcgcgtgattgatgaacttcgc
ccgaccacgcgcgcccccagcgagaagatgaccggtaagccgtcgaagaaagtgctcgct
aaacgcgcagagaagaaaaaagagaaacaaaaagacgcgccgcgcgtgaagaaacgtcac
cgcgataccaaaaacattggtaagcgccgtaagccgagcggtacgagcgtatcgccgcag
tcaggtgaagaataa
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