Citrobacter rodentium: ROD_28621
Help
Entry
ROD_28621 CDS
T01145
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cro
Citrobacter rodentium
Pathway
cro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ROD_28621 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_28621 (recB)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ROD_28621 (recB)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ROD_28621 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CBG89602
UniProt:
D2TIP0
LinkDB
All DBs
Position
complement(3027872..3031420)
Genome browser
AA seq
1182 aa
AA seq
DB search
MNDVAEPLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRNATDNPLYAGLLAEIDDKEQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSMNAFESGMLFELQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLADINRYLQGEAPVIKAPPPADETLASRHEAIVGRINALKQKWCESV
DELEGLLESSGIDRRKFNRGNQGKWIEKISAWAQEETLSYQLPDALDKFSQRFLAERTKA
GGVVPEHPLFVAIDALLAEPLTIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDA
ALRSESGDALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVSARYTLDTNWRSAPGMVNSVNRLFTQMDDAFMFREIPFQPVKS
AGKNQSLRFEFHGETQPAMTMWLMEGESCGVGDYQSYMAQVCAAQIRDWLEAGQRGEALL
VRGDHSRAVSASDISVLVRSRQEAALVRDALTLLAIPSVYLSNRDSVFETLEAQEMLWIL
QAVMTPERENTLRSALATSVMGLNARDIETLNESESAWDRVVEEFVDYRQIWQKRGVMPM
LRKLMSSQHIAENLLATPGGERRLTDILHISELLQEAASQLESEYALVRWLSQHILEPDS
NAASQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRNSFEAVLDL
SHAEESIALAEAERLAEDLRLLYVALTRSIWHCSLGVAPLVRRRGDKKGDTDIHQSALGR
LLQKGEAKDAAGLRAAIGAICDENIHCRMPDVASTASLPSSDEVSASLNARRVRRAPGDS
WRVTSYSGLQQRGHGIAQDLMPRLDIDATGVGEATVLAPERTPHQFPRGASPGTFLHSLF
EDLDFTQPVDAAWVREKLELGGYEEEWEPTLTAWIEAILRAPLNETGVTLSQLSAREKQV
EMEFYLPIAQPLIAGELDALIRQYDPLSAGCPPLEFAQVRGMLKGFIDLVFRHQGRYYLL
DYKSNWLGENSQAYTPEAMASAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVI
YLFLRGVDRAQPEQGIYTTRPHRELIARMDEMFAGIAQEETL
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtcgccgagccccttgatcccctgcgcttgccccttacgggcgagcgcctg
attgaagcctcagccggcaccggaaaaacctttaccatcgccgcgctctatttgcgcctt
ctgcttgggttaggcggttccgccgcctttccccgtccgcttaccgtcgaagaattactg
gtggtgaccttcaccgaggccgccaccgaagagttgcgcggtcgtattcgcagtaatatc
catgaactgcgtatcgcctgtctgcgcaatgccaccgataatccgctttatgccggtctg
ctggcggagatcgacgataaagaacaggcggcgcagtggctgctgctggccgaacggcag
atggacgaggcggccgtttttactatccacggcttctgccagcgtatgctgagcatgaac
gccttcgaatccggcatgttgtttgagctacagctcattgaagatgaatccctgctgcgt
tatcaggcctgcgccgatttctggcggcgtcactgctaccctttaccgcgcgaaatcgcc
caggtggtgtttgagacgtggaaaggcccgcaggctttgctggcggatatcaatcgttac
ctgcaaggggaggcgccggttattaaagcgccgccgccagcggacgaaacgctggcctcc
cgccatgaagccattgtcgggcgaattaatgcgctcaagcaaaaatggtgtgaatcggtc
gatgaactggaggggctgctggagtcttccggcattgatcgacgcaaattcaatcgcggc
aatcagggcaaatggatcgagaagatcagcgcctgggcgcaggaagaaacgctcagctac
cagttaccggacgcgctggataaattttcgcagcgtttcctggcggaacgcaccaaggcg
ggcggcgttgttcctgaacatccgctgtttgtcgccatcgacgcgctgctggcggaaccg
ttaaccatccgcgatctggtgatcacgcgggcgctggcagagatccgtgagacggttgcc
cgtgaaaagcgtcgccgcggcgaactgggatttgacgatatgctcagtcgactggatgcc
gcgctgcgcagtgagagcggcgatgcgctggcggcggcgatacgtacccgttttccggtg
gcgatgatcgatgaatttcaggataccgatccccagcaataccgtatttttcgccgaatc
tggcgacagcagccggagactgcgctgttactgataggcgatccgaagcaggcgatttat
gcctttcgcggcgcggatatctttacctatatgaaggcgcgtagcgaagtgagcgcgcgc
tatacgcttgacaccaactggcgttccgcgccgggcatggtcaacagcgttaacaggctg
ttcactcagatggatgacgccttcatgttccgcgaaattccattccagccggtgaagtcc
gccgggaaaaaccagtcgctgcgctttgagttccacggggaaactcagccagcgatgacg
atgtggctgatggaaggggagagctgcggcgtaggcgactatcagagctatatggcgcag
gtctgcgccgcgcaaattcgcgactggctggaagccggacagcgtggcgaggcccttctt
gttcgcggcgaccattcgcgcgcggtgagcgcatcggatattagcgtactggtcagaagc
cgtcaggaagcggcgctggtgcgtgatgccctgactctgctcgccattccgtccgtctac
ctctctaaccgcgacagcgtgttcgaaacgctggaagcccaggagatgctctggatttta
caggcggtgatgactccggaacgggagaacaccctgcgtagcgcgctggcgacctctgtg
atggggctaaacgcccgcgatatcgaaacgcttaatgaaagcgaaagcgcatgggatcgg
gtggtggaagagtttgtcgactaccgtcagatctggcaaaaacgtggcgttatgccgatg
ctgcgcaaactgatgtcatcgcagcatatcgcggaaaatctgctggcgacgccgggcggt
gagcgtcggctgaccgacattctgcacatcagcgagctgttgcaggaggcggcgtcgcag
ctggaaagcgaatatgcgctggtgcgctggctttcgcagcatatccttgagccggacagc
aatgccgccagtcagcaaatgcgtctggaaagcgataaacatctggtgcagattgtcacc
attcacaaatcaaaagggcttgaatatccgctggtgtggctgccgtttatcaccaatttc
cgcgttcaggatcaggccttttatcacgatcgcaactcatttgaagcggtgctggatctc
agccatgccgaggagagcatcgcgctggccgaggctgaacggctggcggaagatttgcgc
ttgctctacgtggcgctgacccgttccatctggcactgtagcctgggcgttgcgccgctg
gtgcggcgtcggggcgacaaaaaaggcgatacggacattcatcagagcgcgcttggccga
ctgctgcaaaagggcgaagcgaaagatgccgccgggcttcgcgccgctatcggggcgata
tgcgatgagaatattcactgccggatgccggacgtcgccagtacggcgtcgctgccgtcg
tcggacgaagtgagcgcgtcgctgaatgcccgacgggtgcggcgcgcccctggcgacagc
tggcgggtgaccagctattccggcctgcaacagcgtggacacggcatcgcgcaggatctt
atgccgcgtctggatatcgacgccacgggcgttggcgaggcgacggttttggcgccggag
cgcacgccgcaccagttcccgcgcggcgcgtcgccgggaacgttcctgcatagcctgttt
gaagatctcgattttacccagccggtggatgccgcctgggttcgcgaaaagcttgagctg
ggcggctatgaggaagagtgggagcccacgctcaccgcgtggattgaggcgatactgcgc
gcgccgctgaacgaaacgggcgtcactctgagccagcttagcgcgcgggaaaagcaggtt
gagatggagttttatctgccaatcgcgcagccgcttatcgccggtgagctggatgcgctg
attcgtcagtacgatccgctttcggcaggctgtccgccgctggagtttgcccaggttcgc
ggtatgctgaaggggtttatcgatctggtatttcgtcatcaggggcgctattacctgctg
gattacaaatcgaactggctgggtgaaaacagccaggcttataccccggaagcgatggcc
tcggcgatgcaggcacaccgttacgatttgcagtatcagctttacacccttgcgctgcac
cgctatctgcggcaccgtatcgcggattatgactatgagcgccactttggcggggtaatc
tatctgtttttacgcggcgtggatcgcgcacagccagaacagggtatttacacgacccgc
ccgcaccgcgagcttattgcccgcatggacgaaatgtttgccggtattgcacaggaggag
acgctatga
DBGET
integrated database retrieval system
