Citrobacter rodentium: ROD_32391
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Entry
ROD_32391 CDS
T01145
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cro
Citrobacter rodentium
Pathway
cro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROD_32391 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_32391 (rnr)
03016 Transfer RNA biogenesis [BR:
cro03016
]
ROD_32391 (rnr)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ROD_32391 (rnr)
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROD_32391 (rnr)
Transfer RNA biogenesis [BR:
cro03016
]
Prokaryotic type
tRNA degradation factors
ROD_32391 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
CBG89959
UniProt:
D2TN16
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All DBs
Position
3419975..3422428
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AA seq
817 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELHIEGDEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEKQIAGLKEEVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
NKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDRELREQYAPLVKHIEELHNLYKVLEQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISVARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHTGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLENDYYRYDQVGQRLTGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKTSRRRQVGKKVNFEPDSAFRGEKKGKVATQ
PKAAKKSDKKAKKPSEKTLKIAAATKAKRAAKKKAAE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagctgaaaagtacgcgaaccctatcccgagc
cgggaatttatcctcgaacatttaacaaaacgtgaaaaaccggccaaccgcgacgaactg
gccgctgaactgcacattgaaggcgatgaacagcaggaagccctgcgtcgtcgtctgcgc
gcgatggagcgtgacggtcaactggtctttacccgccgccagtgctatgcgctgccggag
cgtctcgatctgctgaagggcatcgttattggccatcgcgacggctacggttttctgcgc
gtcgaagggcgtaaagacgatttgtacctttccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcacagccgttgggcgcagatcgtaaaggtcgtcgtgaagcgcgc
atcgtccgcgtactggtgccgaaaaccagccagattgtggggcgctattttaccgatgcg
ggcgtgggctttgtcgtcccggacgacagccgcctgagttttgatatcctcatcccgcct
gaagaggtgatgggcgcgcggatgggttttgtggtggtggttgaactcacccagcgcccg
acccgccgcaccaaagcggtgggtaaaatcgtcgaggtgctcggcgataatatgggcacc
ggcatggccgttgatatggcgctgcgtacccatgaaatcccctacatctggccgcaggcg
gtagagaagcagattgccggtctgaaagaagaggtgccggaagaggcgaaagcgggacgc
gtggatctgcgttccctgccgctggtgaccatcgacggtgaagacgctcgcgactttgac
gatgcggtttactgcgagaagaaacgcggcggcggctggcgtctgtgggtggcgattgcc
gacgtaagctactacgttcgtccaccgacgccgcttgaccaggaggcgcgcaaccgtggt
acttccgtctacttcccttcgcaggtggtgccgatgctgccggaagtgctctccaacggt
ttgtgctccctcaatccgcaggtcgatcgtctgtgtatggtctgtgaaatgaccatctcg
aataaaggccgtctgaccggatacaaattctacgaagcggtgatgagttcgcatgcgcgt
ctgacctacaccaaggtctggcatatgctgcagggcgatcgggagctgcgcgagcagtat
gcgccgctggttaagcacatcgaagagctgcacaatctctacaaggtgctggagcaagcg
cgtgaagagcgcggcggtatctcgtttgaaagcgaagaggcgaagtttattttcaacgcc
gagcgccgtatcgaacgtatcgagcaaacgcagcgtaacgacgcgcataagctgattgaa
gaatgcatgattctggccaacatttccgtggcgcgtttcgttgagaaagccaaagagcca
gcgctgttccgtatccatgataagccgaccaccgaagcgattacctctttccgttccgtg
ctggcggagctggggctggagctgccgggcggaaacaaaccggagccgcgcgactatgcg
gaactactggagtcggttgccgatcgtccggacgcggaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcgatttacgatccggagaaccgcggtcactttggtctggcgcta
cagtcctacgcgcactttacctcgccgattcgccgttacccggatctctcgttgcaccgc
gccatcaaatatctgctggcgaaagagcaggggcataccggaaacaccactgaaaccggc
ggctatcactactctatggaagagatgctgcagttaggtcagcactgttccatgaccgaa
cgccgcgctgacgaagcgacgcgtgatgtcgctgactggctgaagtgcgactttatgctg
gatcaggtcggcaacgtctttaaaggcgtaattgccagcgtcaccggcttcggcttcttt
gtgcgccttgacgagctgttcatcgatggtctggtacatgtctcctcgctggaaaacgac
tattaccgttacgatcaggtcggacagcgtctgaccggcgaatccagcggccagacctat
cgtctgggcgaccgcgtggaagtgcgcgttgaagcggtcaatatggatgagcgtaagatc
gatttcagcctgatctccagcgagcgcgcgccgcgtaacgttggcaaaacggcgcgtgaa
aaggcgaaaaaaggcgatgccggcaagaaaaccagccgccgtcgccaggtcggcaaaaaa
gtgaactttgagccggacagcgcattccgcggcgagaaaaaaggtaaggtggctactcag
ccgaaagcggcgaagaaaagcgacaaaaaagcgaaaaaaccgtcagaaaaaacgcttaaa
atcgctgccgccacgaaagctaaacgcgcggcgaagaaaaaagccgccgaataa
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