Citrobacter rodentium: ROD_36191
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Entry
ROD_36191 CDS
T01145
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cro
Citrobacter rodentium
Pathway
cro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ROD_36191 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cro03021
]
ROD_36191 (rpoD)
Transcription machinery [BR:
cro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ROD_36191 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
CBG90329
UniProt:
D2TRR9
LinkDB
All DBs
Position
3812300..3814144
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEDLDDDEDEDEEEDDDSADDDNSIDPELAREKFAELRTQYEVTRDTIKAKG
RSHADAQAEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADEVHRGLQKLHQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcgccg
gatgccgatgatctgctgcttgctgaaaacaccaccagtaccgatgaagacgcagaagaa
gcggcagcgcaagttctctccagcgtagagtccgaaatcggtcgtaccaccgacccggtg
cgtatgtatatgcgcgaaatgggcaccgttgaactgttgacccgcgaaggtgaaattgac
atcgcaaaacgcatcgaagacgggatcaatcaggttcagtgctcggttgccgagtacccg
gaagccattacttatctgctggagcagtacgatcgcgttgaagctgaagaagcgcgtctg
tccgatctgatcaccggtttcgtcgatccgaacgcggaagaagatctggcgcctaccgcc
acgcacgtcggctctgaactgtcgcaggaagatctggacgacgatgaggatgaagacgaa
gaagaagacgacgatagcgcggacgacgacaacagcatcgaccctgagctggcgcgtgag
aaattcgccgagctgcgcacgcagtatgaagtgacgcgtgacaccatcaaagcgaaaggt
cgtagccacgcggatgcgcaggcagagatcctcaagctttccgaagtgttcaagcagttc
cgcctagtgccgaagcagttcgactacctcgtgaacagtatgcgcgtgatgatggaccgc
gtgcgtacgcaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaag
aagaatttcatcaccctcttcaccggcaacgaaaccagcgaaacctggttcaacgcggct
atcgcgatgaacaaaccgtggtctgagaaactgcacgacgtggcggatgaagtccatcgc
ggtctgcagaaactgcatcagattgaagaagagaccgggctgaccattgagcaggtaaaa
gatatcaaccgtcgtatgtctatcggcgaagcgaaagcgcgtcgtgcgaaaaaagagatg
gttgaagcgaacctgcgtctggttatctcgatcgccaaaaagtacaccaaccgtggcctg
cagttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgcggttacaagttctccacctatgcaacctggtggatccgtcaggcgatt
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagacc
atcaacaagctcaatcgtatctcccgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggccgagcggatgctgatgccggaagataagatccgtaaggtgctgaag
atcgcgaaagagccgatctctatggaaacaccgatcggcgatgatgaagattcgcatctg
ggtgattttatcgaggataccaccctcgagctgccgctggattcagcgaccacggagagt
ctgcgcgccgccactcatgacgtactggcgggcctgactgcccgtgaagcgaaagtcctg
cgtatgcgttttggtatcgatatgaacaccgaccacacgctggaagaggtgggtaaacaa
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaagcgctgcgcaagctgcgc
cacccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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